Literature DB >> 19404259

Precise genome modification in the crop species Zea mays using zinc-finger nucleases.

Vipula K Shukla1, Yannick Doyon, Jeffrey C Miller, Russell C DeKelver, Erica A Moehle, Sarah E Worden, Jon C Mitchell, Nicole L Arnold, Sunita Gopalan, Xiangdong Meng, Vivian M Choi, Jeremy M Rock, Ying-Ying Wu, George E Katibah, Gao Zhifang, David McCaskill, Matthew A Simpson, Beth Blakeslee, Scott A Greenwalt, Holly J Butler, Sarah J Hinkley, Lei Zhang, Edward J Rebar, Philip D Gregory, Fyodor D Urnov.   

Abstract

Agricultural biotechnology is limited by the inefficiencies of conventional random mutagenesis and transgenesis. Because targeted genome modification in plants has been intractable, plant trait engineering remains a laborious, time-consuming and unpredictable undertaking. Here we report a broadly applicable, versatile solution to this problem: the use of designed zinc-finger nucleases (ZFNs) that induce a double-stranded break at their target locus. We describe the use of ZFNs to modify endogenous loci in plants of the crop species Zea mays. We show that simultaneous expression of ZFNs and delivery of a simple heterologous donor molecule leads to precise targeted addition of an herbicide-tolerance gene at the intended locus in a significant number of isolated events. ZFN-modified maize plants faithfully transmit these genetic changes to the next generation. Insertional disruption of one target locus, IPK1, results in both herbicide tolerance and the expected alteration of the inositol phosphate profile in developing seeds. ZFNs can be used in any plant species amenable to DNA delivery; our results therefore establish a new strategy for plant genetic manipulation in basic science and agricultural applications.

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Year:  2009        PMID: 19404259     DOI: 10.1038/nature07992

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  39 in total

1.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

2.  Rapid, high-throughput engineering of sequence-specific zinc finger DNA-binding proteins.

Authors:  M Isalan; Y Choo
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  High-frequency homologous recombination in plants mediated by zinc-finger nucleases.

Authors:  David A Wright; Jeffrey A Townsend; Ronnie Joe Winfrey; Phillip A Irwin; Jyothi Rajagopal; Patricia M Lonosky; Bradford D Hall; Michael D Jondle; Daniel F Voytas
Journal:  Plant J       Date:  2005-11       Impact factor: 6.417

Review 4.  The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution.

Authors:  Holger Puchta
Journal:  J Exp Bot       Date:  2004-11-22       Impact factor: 6.992

Review 5.  Genetic manipulation of genomes with rare-cutting endonucleases.

Authors:  M Jasin
Journal:  Trends Genet       Date:  1996-06       Impact factor: 11.639

6.  Seeds for a better future: 'low phytate' grains help to overcome malnutrition and reduce pollution.

Authors:  V Raboy
Journal:  Trends Plant Sci       Date:  2001-10       Impact factor: 18.313

7.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

8.  Agrobacterium tumefaciens-mediated transformation of maize embryos using a standard binary vector system.

Authors:  Bronwyn R Frame; Huixia Shou; Rachel K Chikwamba; Zhanyuan Zhang; Chengbin Xiang; Tina M Fonger; Sue Ellen K Pegg; Baochun Li; Dan S Nettleton; Deqing Pei; Kan Wang
Journal:  Plant Physiol       Date:  2002-05       Impact factor: 8.340

Review 9.  myo-Inositol-1,2,3,4,5,6-hexakisphosphate.

Authors:  Victor Raboy
Journal:  Phytochemistry       Date:  2003-11       Impact factor: 4.072

10.  Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from maize: molecular and biochemical characterization.

Authors:  Yuejin Sun; Mark Thompson; Gaofeng Lin; Holly Butler; Zhifang Gao; Scott Thornburgh; Kerrm Yau; Doug A Smith; Vipula K Shukla
Journal:  Plant Physiol       Date:  2007-05-25       Impact factor: 8.340

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  223 in total

1.  Inositol 1,3,4,5,6-pentakisphosphate 2-kinase is a distant IPK member with a singular inositide binding site for axial 2-OH recognition.

Authors:  Beatriz González; Jose Ignacio Baños-Sanz; Maider Villate; Charles Alistair Brearley; Julia Sanz-Aparicio
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-07       Impact factor: 11.205

2.  In planta gene targeting.

Authors:  Friedrich Fauser; Nadine Roth; Michael Pacher; Gabriele Ilg; Rocío Sánchez-Fernández; Christian Biesgen; Holger Puchta
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

Review 3.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

4.  Zinc finger nuclease-mediated transgene deletion.

Authors:  Joseph F Petolino; Andrew Worden; Krisi Curlee; James Connell; Tonya L Strange Moynahan; Cory Larsen; Sean Russell
Journal:  Plant Mol Biol       Date:  2010-05-08       Impact factor: 4.076

5.  Breaking news: plants mutate right on target.

Authors:  Holger Puchta; Barbara Hohn
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-16       Impact factor: 11.205

6.  A time-invariant principle of genome evolution.

Authors:  Subhajyoti De; M Madan Babu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-06       Impact factor: 11.205

7.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

8.  Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases.

Authors:  Keishi Osakabe; Yuriko Osakabe; Seiichi Toki
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-27       Impact factor: 11.205

9.  High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.

Authors:  Feng Zhang; Morgan L Maeder; Erica Unger-Wallace; Justin P Hoshaw; Deepak Reyon; Michelle Christian; Xiaohong Li; Christopher J Pierick; Drena Dobbs; Thomas Peterson; J Keith Joung; Daniel F Voytas
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-27       Impact factor: 11.205

Review 10.  New breeding technique "genome editing" for crop improvement: applications, potentials and challenges.

Authors:  Supriya B Aglawe; Kalyani M Barbadikar; Satendra K Mangrauthia; M Sheshu Madhav
Journal:  3 Biotech       Date:  2018-07-23       Impact factor: 2.406

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