Literature DB >> 19398004

Genetic analysis of P-TEFb function via heterologous nucleic acid tethering systems.

Qintong Li1, B Matija Peterlin.   

Abstract

Recent global genetic analyses demonstrated that the regulation of gene expression at the level of transcription elongation is a common feature in eukaryotes. The positive transcription elongation factor P-TEFb plays a critical role in this process. P-TEFb is a cyclin-dependent kinase, which controls the fraction of RNA polymerase II (RNAP II) that can enter productive elongation. While the biochemical properties of P-TEFb and its associated factors have been characterized extensively in vitro, its function in vivo remains less well understood. In this paper, we describe various heterologous nucleic acid tethering systems that can be used to examine transcription factors that function via P-TEFb.

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Year:  2009        PMID: 19398004      PMCID: PMC2745987          DOI: 10.1016/j.ymeth.2009.04.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  26 in total

1.  P-TEFb containing cyclin K and Cdk9 can activate transcription via RNA.

Authors:  Xin Lin; Ran Taube; Koh Fujinaga; B Matija Peterlin
Journal:  J Biol Chem       Date:  2002-03-07       Impact factor: 5.157

2.  NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.

Authors:  M Barboric; R M Nissen; S Kanazawa; N Jabrane-Ferrat; B M Peterlin
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

3.  VP16 and ubiquitin; binding of P-TEFb via its activation domain and ubiquitin facilitates elongation of transcription of target genes.

Authors:  Takeshi Kurosu; B Matija Peterlin
Journal:  Curr Biol       Date:  2004-06-22       Impact factor: 10.834

Review 4.  Poised polymerases: on your mark...get set...go!

Authors:  David H Price
Journal:  Mol Cell       Date:  2008-04-11       Impact factor: 17.970

5.  Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription.

Authors:  T J Fu; J Peng; G Lee; D H Price; O Flores
Journal:  J Biol Chem       Date:  1999-12-03       Impact factor: 5.157

6.  An inducible transcription factor activates expression of human immunodeficiency virus in T cells.

Authors:  G Nabel; D Baltimore
Journal:  Nature       Date:  1987 Apr 16-22       Impact factor: 49.962

7.  Androgen receptor interacts with the positive elongation factor P-TEFb and enhances the efficiency of transcriptional elongation.

Authors:  D K Lee; H O Duan; C Chang
Journal:  J Biol Chem       Date:  2000-12-21       Impact factor: 5.157

8.  c-Myc recruits P-TEFb for transcription, cellular proliferation and apoptosis.

Authors:  Satoshi Kanazawa; Laura Soucek; Gerard Evan; Takashi Okamoto; B Matija Peterlin
Journal:  Oncogene       Date:  2003-08-28       Impact factor: 9.867

9.  A model of repression: CTD analogs and PIE-1 inhibit transcriptional elongation by P-TEFb.

Authors:  Fan Zhang; Matjaz Barboric; T Keith Blackwell; B Matija Peterlin
Journal:  Genes Dev       Date:  2003-03-15       Impact factor: 11.361

10.  Activation of MyoD-dependent transcription by cdk9/cyclin T2.

Authors:  Cristiano Simone; Peter Stiegler; Luigi Bagella; Bruna Pucci; Cristiana Bellan; Giulia De Falco; Antonio De Luca; Ginevra Guanti; Pier Lorenzo Puri; Antonio Giordano
Journal:  Oncogene       Date:  2002-06-13       Impact factor: 9.867

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  3 in total

1.  Transition step during assembly of HIV Tat:P-TEFb transcription complexes and transfer to TAR RNA.

Authors:  Iván D'Orso; Gwendolyn M Jang; Alexander W Pastuszak; Tyler B Faust; Elizabeth Quezada; David S Booth; Alan D Frankel
Journal:  Mol Cell Biol       Date:  2012-09-24       Impact factor: 4.272

2.  Isolation and functional characterization of P-TEFb-associated factors that control general and HIV-1 transcriptional elongation.

Authors:  Ruichuan Chen; Min Liu; Kai Zhang; Qiang Zhou
Journal:  Methods       Date:  2010-04-10       Impact factor: 3.608

3.  Phosphatase PPM1A negatively regulates P-TEFb function in resting CD4(+) T cells and inhibits HIV-1 gene expression.

Authors:  Sona Budhiraja; Rajesh Ramakrishnan; Andrew P Rice
Journal:  Retrovirology       Date:  2012-06-22       Impact factor: 4.602

  3 in total

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