Literature DB >> 19397580

Bayesian calibration of a stochastic kinetic computer model using multiple data sources.

D A Henderson1, R J Boys, D J Wilkinson.   

Abstract

In this article, we describe a Bayesian approach to the calibration of a stochastic computer model of chemical kinetics. As with many applications in the biological sciences, the data available to calibrate the model come from different sources. Furthermore, these data appear to provide somewhat conflicting information about the model parameters. We describe a modeling framework that allows us to synthesize this conflicting information and arrive at a consensus inference. In particular, we show how random effects can be incorporated into the model to account for between-individual heterogeneity that may be the source of the apparent conflict.

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Year:  2009        PMID: 19397580     DOI: 10.1111/j.1541-0420.2009.01245.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  3 in total

1.  Inverse Gillespie for inferring stochastic reaction mechanisms from intermittent samples.

Authors:  Ishanu Chattopadhyay; Anna Kuchina; Gürol M Süel; Hod Lipson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-22       Impact factor: 11.205

2.  Maximum probability reaction sequences in stochastic chemical kinetic systems.

Authors:  Maryam Salehi; Theodore J Perkins
Journal:  Front Physiol       Date:  2010-10-19       Impact factor: 4.566

3.  Parameter inference for discretely observed stochastic kinetic models using stochastic gradient descent.

Authors:  Yuanfeng Wang; Scott Christley; Eric Mjolsness; Xiaohui Xie
Journal:  BMC Syst Biol       Date:  2010-07-21
  3 in total

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