Literature DB >> 19392818

DOGSET: pre-designed primer sets for fine-scale mapping and DNA sequence interrogation in the dog.

A K Wong1, M W Neff.   

Abstract

DOGSET is an online resource that provides access to primer sequences that have been computationally mined from the reference genome using heuristic algorithms. The electronic repository includes PCR primers corresponding to 32,135 markers for genetic mapping and 334,657 sequence-tagged gene elements for targeted re-sequencing and mutation discovery. A customized report that tailors primer design to wet bench protocols can be exported for a region of interest by specifying genome coordinates in a graphical user interface.

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Year:  2009        PMID: 19392818     DOI: 10.1111/j.1365-2052.2009.01875.x

Source DB:  PubMed          Journal:  Anim Genet        ISSN: 0268-9146            Impact factor:   3.169


  6 in total

1.  A novel mitofusin 2 mutation causes canine fetal-onset neuroaxonal dystrophy.

Authors:  John C Fyfe; Rabá A Al-Tamimi; Junlong Liu; Alejandro A Schäffer; Richa Agarwala; Paula S Henthorn
Journal:  Neurogenetics       Date:  2011-06-04       Impact factor: 2.660

2.  An ADAMTSL2 founder mutation causes Musladin-Lueke Syndrome, a heritable disorder of beagle dogs, featuring stiff skin and joint contractures.

Authors:  Hannah L Bader; Alison L Ruhe; Lauren W Wang; Aaron K Wong; Kari F Walsh; Rebecca A Packer; Jonathan Mitelman; Kathryn R Robertson; Dennis P O'Brien; Karl W Broman; G Diane Shelton; Suneel S Apte; Mark W Neff
Journal:  PLoS One       Date:  2010-09-17       Impact factor: 3.240

3.  Coat variation in the domestic dog is governed by variants in three genes.

Authors:  Edouard Cadieu; Mark W Neff; Pascale Quignon; Kari Walsh; Kevin Chase; Heidi G Parker; Bridgett M Vonholdt; Alison Rhue; Adam Boyko; Alexandra Byers; Aaron Wong; Dana S Mosher; Abdel G Elkahloun; Tyrone C Spady; Catherine André; K Gordon Lark; Michelle Cargill; Carlos D Bustamante; Robert K Wayne; Elaine A Ostrander
Journal:  Science       Date:  2009-08-27       Impact factor: 47.728

4.  A Deletion in the Canine POMC Gene Is Associated with Weight and Appetite in Obesity-Prone Labrador Retriever Dogs.

Authors:  Eleanor Raffan; Rowena J Dennis; Conor J O'Donovan; Julia M Becker; Robert A Scott; Stephen P Smith; David J Withers; Claire J Wood; Elena Conci; Dylan N Clements; Kim M Summers; Alexander J German; Cathryn S Mellersh; Maja L Arendt; Valentine P Iyemere; Elaine Withers; Josefin Söder; Sara Wernersson; Göran Andersson; Kerstin Lindblad-Toh; Giles S H Yeo; Stephen O'Rahilly
Journal:  Cell Metab       Date:  2016-05-03       Impact factor: 27.287

5.  Whole-genome sequence, SNP chips and pedigree structure: building demographic profiles in domestic dog breeds to optimize genetic-trait mapping.

Authors:  Dayna L Dreger; Maud Rimbault; Brian W Davis; Adrienne Bhatnagar; Heidi G Parker; Elaine A Ostrander
Journal:  Dis Model Mech       Date:  2016-11-17       Impact factor: 5.758

6.  Comparison of Behavior and Genetic Structure in Populations of Family and Kenneled Beagles.

Authors:  Borbála Turcsán; Kitti Tátrai; Eszter Petró; József Topál; Lajos Balogh; Balázs Egyed; Eniko Kubinyi
Journal:  Front Vet Sci       Date:  2020-04-15
  6 in total

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