Literature DB >> 19391991

Mechanisms of proton transfer in proteins: localized charge transfer versus delocalized soliton transfer.

Alexei A Stuchebrukhov1.   

Abstract

Proton translocation coupled to redox chemistry is ubiquitous for membrane enzymes involved in energy generation in cells. In such enzymes, proton transport occurs in special proton conducting channels, which consist of a series of protonatable groups of the protein connected by chains of mobile water molecules. Here we discuss two possible mechanisms of proton transport along such structures: diffusion of a localized charge and delocalized soliton transitions, in which several protons are collectively shifted along a chain of hydrogen bonds.

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Year:  2009        PMID: 19391991      PMCID: PMC4213182          DOI: 10.1103/PhysRevE.79.031927

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  30 in total

1.  Framework model for single proton conduction through gramicidin.

Authors:  M F Schumaker; R Pomès; B Roux
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  The formation and dynamics of proton wires in channel environments.

Authors:  M L Brewer; U W Schmitt; G A Voth
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

Review 3.  Proton and electron transfer in bacterial reaction centers.

Authors:  M Y Okamura; M L Paddock; M S Graige; G Feher
Journal:  Biochim Biophys Acta       Date:  2000-05-12

4.  Molecular dynamics simulation of proton transport near the surface of a phospholipid membrane.

Authors:  Alexander M Smondyrev; Gregory A Voth
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

5.  Proton transport via the membrane surface.

Authors:  Yuri Georgievskii; Emile S Medvedev; Alexei A Stuchebrukhov
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

Review 6.  Structure and function of cytochrome bc complexes.

Authors:  E A Berry; M Guergova-Kuras; L S Huang; A R Crofts
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

7.  Molecular dynamics simulation of proton transport through the influenza A virus M2 channel.

Authors:  Alexander M Smondyrev; Gregory A Voth
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

8.  Exploring pathways and barriers for coupled ET/PT in cytochrome c oxidase: a general framework for examining energetics and mechanistic alternatives.

Authors:  Mats H M Olsson; Per E M Siegbahn; Margareta R A Blomberg; Arieh Warshel
Journal:  Biochim Biophys Acta       Date:  2007-01-30

Review 9.  Proton solvation and transport in aqueous and biomolecular systems: insights from computer simulations.

Authors:  Jessica M J Swanson; C Mark Maupin; Hanning Chen; Matt K Petersen; Jiancong Xu; Yujie Wu; Gregory A Voth
Journal:  J Phys Chem B       Date:  2007-04-13       Impact factor: 2.991

10.  Electrostatic basis for the unidirectionality of the primary proton transfer in cytochrome c oxidase.

Authors:  Andrei V Pisliakov; Pankaz K Sharma; Zhen T Chu; Maciej Haranczyk; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-28       Impact factor: 11.205

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  8 in total

1.  Functional interactions between membrane-bound transporters and membranes.

Authors:  Linda Näsvik Ojemyr; Hyun Ju Lee; Robert B Gennis; Peter Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-23       Impact factor: 11.205

Review 2.  Theory of coupled electron and proton transfer reactions.

Authors:  Sharon Hammes-Schiffer; Alexei A Stuchebrukhov
Journal:  Chem Rev       Date:  2010-11-04       Impact factor: 60.622

3.  Structurally conserved channels in cyanobacterial and plant photosystem II.

Authors:  Naoki Sakashita; Hiroshi C Watanabe; Takuya Ikeda; Hiroshi Ishikita
Journal:  Photosynth Res       Date:  2017-02-10       Impact factor: 3.573

4.  Energetics and dynamics of proton transfer reactions along short water wires.

Authors:  Ville R I Kaila; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-06-23       Impact factor: 3.676

5.  Similarity of cytochrome c oxidases in different organisms.

Authors:  D M Popovic; I V Leontyev; D G Beech; A A Stuchebrukhov
Journal:  Proteins       Date:  2010-09

6.  The Existence of an Isolated Hydronium Ion in the Interior of Proteins.

Authors:  Takuya Ikeda; Keisuke Saito; Ryo Hasegawa; Hiroshi Ishikita
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-30       Impact factor: 15.336

7.  Proton-mediated photoprotection mechanism in photosystem II.

Authors:  Yu Sugo; Hiroshi Ishikita
Journal:  Front Plant Sci       Date:  2022-09-07       Impact factor: 6.627

8.  Energetics of proton release on the first oxidation step in the water-oxidizing enzyme.

Authors:  Keisuke Saito; A William Rutherford; Hiroshi Ishikita
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

  8 in total

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