Literature DB >> 19388754

Solvent dependent structural perturbations of chemical reaction intermediates visualized by time-resolved x-ray diffraction.

Jonathan Vincent1, Magnus Andersson, Mattias Eklund, Annemarie B Wöhri, Michael Odelius, Erik Malmerberg, Qingyu Kong, Michael Wulff, Richard Neutze, Jan Davidsson.   

Abstract

Ultrafast time-resolved wide angle x-ray scattering from chemical reactions in solution has recently emerged as a powerful technique for determining the structural dynamics of transient photochemical species. Here we examine the structural evolution of photoexcited CH(2)I(2) in the nonpolar solvent cyclohexane and draw comparisons with a similar study in the polar solvent methanol. As with earlier spectroscopic studies, our data confirm a common initial reaction pathway in both solvents. After photoexcitation, CH(2)I(2) dissociates to form CH(2)I* + I*. Iodine radicals remaining within the solvent cage recombine with a nascent CH(2)I* radical to form the transient isomer CH(2)I-I, whereas those which escape the solvent cage ultimately combine to form I(2) in cyclohexane. Moreover, the transient isomer has a lifetime approximately 30 times longer in the nonpolar solvent. Of greater chemical significance is the property of time-resolved wide angle x-ray diffraction to accurately determine the structure of the of CH(2)I-I reaction intermediate. Thus we observe that the transient iodine-iodine bond is 0.07 A+/-0.04 A shorter in cyclohexane than in methanol. A longer iodine-iodine bond length for the intermediate arises in methanol due to favorable H-bond interaction with the polar solvent. These findings establish that time-resolved x-ray diffraction has sufficient sensitivity to enable solvent dependent structural perturbations of transient chemical species to be accurately resolved.

Entities:  

Year:  2009        PMID: 19388754     DOI: 10.1063/1.3111401

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

1.  Direct observation of myoglobin structural dynamics from 100 picoseconds to 1 microsecond with picosecond X-ray solution scattering.

Authors:  Kyung Hwan Kim; Key Young Oang; Jeongho Kim; Jae Hyuk Lee; Youngmin Kim; Hyotcherl Ihee
Journal:  Chem Commun (Camb)       Date:  2010-08-24       Impact factor: 6.222

2.  Sub-100-ps structural dynamics of horse heart myoglobin probed by time-resolved X-ray solution scattering.

Authors:  Key Young Oang; Kyung Hwan Kim; Junbeom Jo; Youngmin Kim; Jong Goo Kim; Tae Wu Kim; Sunhong Jun; Jeongho Kim; Hyotcherl Ihee
Journal:  Chem Phys       Date:  2014-10-17       Impact factor: 2.348

Review 3.  Reaction dynamics studied via femtosecond X-ray liquidography at X-ray free-electron lasers.

Authors:  Eun Hyuk Choi; Yunbeom Lee; Jun Heo; Hyotcherl Ihee
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

4.  Time-resolved structural studies of protein reaction dynamics: a smorgasbord of X-ray approaches.

Authors:  Sebastian Westenhoff; Elena Nazarenko; Erik Malmerberg; Jan Davidsson; Gergely Katona; Richard Neutze
Journal:  Acta Crystallogr A       Date:  2010-02-18       Impact factor: 2.290

5.  Direct observation of cooperative protein structural dynamics of homodimeric hemoglobin from 100 ps to 10 ms with pump-probe X-ray solution scattering.

Authors:  Kyung Hwan Kim; Srinivasan Muniyappan; Key Young Oang; Jong Goo Kim; Shunsuke Nozawa; Tokushi Sato; Shin-ya Koshihara; Robert Henning; Irina Kosheleva; Hosung Ki; Youngmin Kim; Tae Wu Kim; Jeongho Kim; Shin-ichi Adachi; Hyotcherl Ihee
Journal:  J Am Chem Soc       Date:  2012-04-12       Impact factor: 15.419

6.  Cooperative protein structural dynamics of homodimeric hemoglobin linked to water cluster at subunit interface revealed by time-resolved X-ray solution scattering.

Authors:  Jong Goo Kim; Srinivasan Muniyappan; Key Young Oang; Tae Wu Kim; Cheolhee Yang; Kyung Hwan Kim; Jeongho Kim; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2016-04-14       Impact factor: 2.920

7.  SVD-aided pseudo principal-component analysis: A new method to speed up and improve determination of the optimum kinetic model from time-resolved data.

Authors:  Key Young Oang; Cheolhee Yang; Srinivasan Muniyappan; Jeongho Kim; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2017-04-05       Impact factor: 2.920

8.  Tracking the picosecond deactivation dynamics of a photoexcited iron carbene complex by time-resolved X-ray scattering.

Authors:  Denis Leshchev; Tobias C B Harlang; Lisa A Fredin; Dmitry Khakhulin; Yizhu Liu; Elisa Biasin; Mads G Laursen; Gemma E Newby; Kristoffer Haldrup; Martin M Nielsen; Kenneth Wärnmark; Villy Sundström; Petter Persson; Kasper S Kjær; Michael Wulff
Journal:  Chem Sci       Date:  2017-10-31       Impact factor: 9.825

9.  Ultrafast structural dynamics of in-cage isomerization of diiodomethane in solution.

Authors:  Hanui Kim; Jong Goo Kim; Tae Wu Kim; Sang Jin Lee; Shunsuke Nozawa; Shin-Ichi Adachi; Kihwan Yoon; Joonghan Kim; Hyotcherl Ihee
Journal:  Chem Sci       Date:  2020-12-07       Impact factor: 9.825

Review 10.  Topical Review: Molecular reaction and solvation visualized by time-resolved X-ray solution scattering: Structure, dynamics, and their solvent dependence.

Authors:  Kyung Hwan Kim; Jeongho Kim; Jae Hyuk Lee; Hyotcherl Ihee
Journal:  Struct Dyn       Date:  2014-02-11       Impact factor: 2.920

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