Literature DB >> 19388733

An electron-preceding perspective on the deformation of materials.

Paul W Ayers1, Samantha Jenkins.   

Abstract

Elements of Bader's theory of atoms in molecules are combined with density-functional theory to provide an electron-preceding perspective on the deformation of materials. From this perspective, a network of atoms is changed by moving the bonds that connect them; the nuclei then follow. The electronic stress tensor is the key to understanding this process. Eigenvectors of the electronic stress tensor at critical points of the electron density provide insight into the "normal electronic modes" that accompany structural dynamics and rearrangements. Eigenvectors of the second-derivative matrix of the electron density emerge as effective approximations to the eigenvectors of the stress tensor; this makes it possible to apply our results to experimentally and computationally determined electron densities. To demonstrate the usefulness of our analysis, we show that (a) the low-frequency modes of ice Ic can be predicted from the eigenvectors of the second-derivative matrix and (b) the eigenvectors of the second-derivative matrix are associated with the direction of structural change during the pressure-induced phase transition from ice XI to a ferroelectric ice VIII-like structure. We conclude that the eigenvectors of the second-derivative matrix of the electron density are the key ingredient for constructing a dynamical theory of atoms in molecules.

Year:  2009        PMID: 19388733     DOI: 10.1063/1.3098140

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Exploring hydrogen bond in the excited state leading toward intramolecular proton transfer: detailed analysis of the structure and charge density topology along the reaction path using QTAIM.

Authors:  Sivaprasad Mitra; Asit K Chandra; Pynsakhiat Miki Gashnga; Samantha Jenkins; Steven R Kirk
Journal:  J Mol Model       Date:  2012-05-04       Impact factor: 1.810

2.  Halogen and Hydrogen Bonding in Halogenabenzene/NH3 Complexes Compared Using Next-Generation QTAIM.

Authors:  Shuman Li; Tianlv Xu; Tanja van Mourik; Herbert Früchtl; Steven R Kirk; Samantha Jenkins
Journal:  Molecules       Date:  2019-08-08       Impact factor: 4.411

3.  Quantified electrostatic preorganization in enzymes using the geometry of the electron charge density.

Authors:  Amanda Morgenstern; Matthew Jaszai; Mark E Eberhart; Anastassia N Alexandrova
Journal:  Chem Sci       Date:  2017-04-24       Impact factor: 9.825

  3 in total

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