Literature DB >> 19384998

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

Kengo Usui1, Tei Maki, Fuyu Ito, Atsushi Suenaga, Satoru Kidoaki, Masayoshi Itoh, Makoto Taiji, Takehisa Matsuda, Yoshihide Hayashizaki, Harukazu Suzuki.   

Abstract

Self-assembly of artificially designed proteins is extremely desirable for nanomaterials. Here we show a novel strategy for the creation of self-assembling proteins, named "Nanolego." Nanolego consists of "structural elements" of a structurally stable symmetrical homo-oligomeric protein and "binding elements," which are multiple heterointeraction proteins with relatively weak affinity. We have established two key technologies for Nanolego, a stabilization method and a method for terminating the self-assembly process. The stabilization method is mediated by disulfide bonds between Cysteine-residues incorporated into the binding elements, and the termination method uses "capping Nanolegos," in which some of the binding elements in the Nanolego are absent for the self-assembled ends. With these technologies, we successfully constructed timing-controlled and size-regulated filament-shape complexes via Nanolego self-assembly. The Nanolego concept and these technologies should pave the way for regulated nanoarchitecture using designed proteins.

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Year:  2009        PMID: 19384998      PMCID: PMC2771298          DOI: 10.1002/pro.106

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  18 in total

1.  Structures of the superoxide reductase from Pyrococcus furiosus in the oxidized and reduced states.

Authors:  A P Yeh; Y Hu; F E Jenney; M W Adams; D C Rees
Journal:  Biochemistry       Date:  2000-03-14       Impact factor: 3.162

2.  Nanohedra: using symmetry to design self assembling protein cages, layers, crystals, and filaments.

Authors:  J E Padilla; C Colovos; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

Review 3.  Generalized born models of macromolecular solvation effects.

Authors:  D Bashford; D A Case
Journal:  Annu Rev Phys Chem       Date:  2000       Impact factor: 12.703

Review 4.  Structural symmetry and protein function.

Authors:  D S Goodsell; A J Olson
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

Review 5.  Fabrication of novel biomaterials through molecular self-assembly.

Authors:  Shuguang Zhang
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

6.  Self-assembly of proteins into designed networks.

Authors:  Philippe Ringler; Georg E Schulz
Journal:  Science       Date:  2003-10-03       Impact factor: 47.728

7.  Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain.

Authors:  Nicholas J Skelton; Michael F T Koehler; Kerry Zobel; Wai Lee Wong; Sherry Yeh; M Theresa Pisabarro; Jian Ping Yin; Laurence A Lasky; Sachdev S Sidhu
Journal:  J Biol Chem       Date:  2002-11-20       Impact factor: 5.157

8.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

9.  A monovalent streptavidin with a single femtomolar biotin binding site.

Authors:  Mark Howarth; Daniel J-F Chinnapen; Kimberly Gerrow; Pieter C Dorrestein; Melanie R Grandy; Neil L Kelleher; Alaa El-Husseini; Alice Y Ting
Journal:  Nat Methods       Date:  2006-04       Impact factor: 28.547

10.  Self-assembled "dock and lock" system for linking payloads to targeting proteins.

Authors:  Marina V Backer; Vimal Patel; Brian T Jehning; Joseph M Backer
Journal:  Bioconjug Chem       Date:  2006 Jul-Aug       Impact factor: 4.774

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  13 in total

1.  Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers.

Authors:  Masaru Yamanaka; Makoto Hoshizumi; Satoshi Nagao; Ryoko Nakayama; Naoki Shibata; Yoshiki Higuchi; Shun Hirota
Journal:  Protein Sci       Date:  2017-02-14       Impact factor: 6.725

2.  Nanobiotechnology: protein arrays made to order.

Authors:  Todd O Yeates
Journal:  Nat Nanotechnol       Date:  2011-07-31       Impact factor: 39.213

3.  Flexible, symmetry-directed approach to assembling protein cages.

Authors:  Aaron Sciore; Min Su; Philipp Koldewey; Joseph D Eschweiler; Kelsey A Diffley; Brian M Linhares; Brandon T Ruotolo; James C A Bardwell; Georgios Skiniotis; E Neil G Marsh
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-18       Impact factor: 11.205

4.  Evaluation of a symmetry-based strategy for assembling protein complexes.

Authors:  Dustin P Patterson; Ankur M Desai; Mark M Banaszak Holl; E Neil G Marsh
Journal:  RSC Adv       Date:  2011-10-21       Impact factor: 3.361

5.  Symmetry-based self-assembled nanotubes constructed using native protein structures: the key role of flexible linkers.

Authors:  Idit Buch; Chung-Jung Tsai; Haim J Wolfson; Ruth Nussinov
Journal:  Protein Pept Lett       Date:  2011-04       Impact factor: 1.890

6.  Computational design of self-assembling protein nanomaterials with atomic level accuracy.

Authors:  Neil P King; William Sheffler; Michael R Sawaya; Breanna S Vollmar; John P Sumida; Ingemar André; Tamir Gonen; Todd O Yeates; David Baker
Journal:  Science       Date:  2012-06-01       Impact factor: 47.728

7.  Design of a hyperstable 60-subunit protein dodecahedron. [corrected].

Authors:  Yang Hsia; Jacob B Bale; Shane Gonen; Dan Shi; William Sheffler; Kimberly K Fong; Una Nattermann; Chunfu Xu; Po-Ssu Huang; Rashmi Ravichandran; Sue Yi; Trisha N Davis; Tamir Gonen; Neil P King; David Baker
Journal:  Nature       Date:  2016-06-15       Impact factor: 49.962

8.  Accurate design of megadalton-scale two-component icosahedral protein complexes.

Authors:  Jacob B Bale; Shane Gonen; Yuxi Liu; William Sheffler; Daniel Ellis; Chantz Thomas; Duilio Cascio; Todd O Yeates; Tamir Gonen; Neil P King; David Baker
Journal:  Science       Date:  2016-07-22       Impact factor: 47.728

9.  Accurate design of co-assembling multi-component protein nanomaterials.

Authors:  Neil P King; Jacob B Bale; William Sheffler; Dan E McNamara; Shane Gonen; Tamir Gonen; Todd O Yeates; David Baker
Journal:  Nature       Date:  2014-05-25       Impact factor: 49.962

10.  A high throughput approach for the generation of orthogonally interacting protein pairs.

Authors:  Justin Lawrie; Xi Song; Wei Niu; Jiantao Guo
Journal:  Sci Rep       Date:  2018-01-17       Impact factor: 4.379

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