Literature DB >> 19378990

Mapping adverse drug reactions in chemical space.

Josef Scheiber1, Jeremy L Jenkins, Sai Chetan K Sukuru, Andreas Bender, Dmitri Mikhailov, Mariusz Milik, Kamal Azzaoui, Steven Whitebread, Jacques Hamon, Laszlo Urban, Meir Glick, John W Davies.   

Abstract

We present a novel method to better investigate adverse drug reactions in chemical space. By integrating data sources about adverse drug reactions of drugs with an established cheminformatics modeling method, we generate a data set that is then visualized with a systems biology tool. Thereby new insights into undesired drug effects are gained. In this work, we present a global analysis linking chemical features to adverse drug reactions.

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Year:  2009        PMID: 19378990     DOI: 10.1021/jm801546k

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  42 in total

1.  Virtual target screening: validation using kinase inhibitors.

Authors:  Daniel N Santiago; Yuri Pevzner; Ashley A Durand; MinhPhuong Tran; Rachel R Scheerer; Kenyon Daniel; Shen-Shu Sung; H Lee Woodcock; Wayne C Guida; Wesley H Brooks
Journal:  J Chem Inf Model       Date:  2012-07-23       Impact factor: 4.956

2.  Drug discovery in a multidimensional world: systems, patterns, and networks.

Authors:  Joel T Dudley; Eric Schadt; Marina Sirota; Atul J Butte; Euan Ashley
Journal:  J Cardiovasc Transl Res       Date:  2010-07-31       Impact factor: 4.132

3.  Prediction and evaluation of protein farnesyltransferase inhibition by commercial drugs.

Authors:  Amanda J DeGraw; Michael J Keiser; Joshua D Ochocki; Brian K Shoichet; Mark D Distefano
Journal:  J Med Chem       Date:  2010-03-25       Impact factor: 7.446

4.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

5.  A strategy based on protein-protein interface motifs may help in identifying drug off-targets.

Authors:  H Billur Engin; Ozlem Keskin; Ruth Nussinov; Attila Gursoy
Journal:  J Chem Inf Model       Date:  2012-07-31       Impact factor: 4.956

6.  Exploring the relationship between drug side-effects and therapeutic indications.

Authors:  Ping Zhang; Fei Wang; Jianying Hu; Robert Sorrentino
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

7.  Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.

Authors:  Yoshihiro Yamanishi; Masaaki Kotera; Minoru Kanehisa; Susumu Goto
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

Review 8.  The chemical basis of pharmacology.

Authors:  Michael J Keiser; John J Irwin; Brian K Shoichet
Journal:  Biochemistry       Date:  2010-11-12       Impact factor: 3.162

9.  A structure-based approach for mapping adverse drug reactions to the perturbation of underlying biological pathways.

Authors:  Izhar Wallach; Navdeep Jaitly; Ryan Lilien
Journal:  PLoS One       Date:  2010-08-23       Impact factor: 3.240

Review 10.  Predicting drug side-effects by chemical systems biology.

Authors:  Nicholas P Tatonetti; Tianyun Liu; Russ B Altman
Journal:  Genome Biol       Date:  2009-09-02       Impact factor: 13.583

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