Literature DB >> 19378988

Probing ligand effects on the redox energies of [4Fe-4S] clusters using broken-symmetry density functional theory.

Shuqiang Niu1, Toshiko Ichiye.   

Abstract

A central issue in understanding redox properties of iron-sulfur proteins is determining the factors that tune the reduction potentials of the Fe-S clusters. Recently, Solomon and coworkers have shown that the Fe-S bond covalency of protein analogs measured by %L, the percent ligand character of the Fe 3d orbitals, from ligand K-edge X-ray absorption spectroscopy (XAS) correlates with the electrochemical redox potentials. Also, Wang and coworkers have measured electron detachment energies for iron-sulfur clusters without environmental perturbations by gas-phase photoelectron spectroscopy (PES). Here the correlations of the ligand character with redox energy and %L character are examined in [Fe(4)S(4)L(4)](2-) clusters with different ligands by broken symmetry density functional theory (BS-DFT) calculations using the B3LYP functional together with PES and XAS experimental results. These gas-phase studies assess ligand effects independently of environmental perturbations and thus provide essential information for computational studies of iron-sulfur proteins. The B3LYP oxidation energies agree well with PES data, and the %L character obtained from natural bond orbital analysis correlates with XAS values, although it systematically underestimates them because of basis set effects. The results show that stronger electron-donating terminal ligands increase %L(t), the percent ligand character from terminal ligands, but decrease %S(b), the percent ligand character from the bridging sulfurs. Because the oxidized orbital has significant Fe-L(t) antibonding character, the oxidation energy correlates well with %L(t). However, because the reduced orbital has varying contributions of both Fe-L(t) and Fe-S(b) antibonding character, the reduction energy does not correlate with either %L(t) or %S(b). Overall, BS-DFT calculations together with XAS and PES experiments can unravel the complex underlying factors in the redox energy and chemical bonding of the [4Fe-4S] clusters in iron-sulfur proteins.

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Year:  2009        PMID: 19378988      PMCID: PMC2692907          DOI: 10.1021/jp809446q

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  Protein effects on the electronic structure of the [Fe4S4]2+ cluster in ferredoxin and HiPIP.

Authors:  T Glaser; I Bertini; J J Moura; B Hedman; K O Hodgson; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-05-23       Impact factor: 15.419

2.  Direct measurement of the hydrogen-bonding effect on the intrinsic redox potentials of [4Fe-4S] cubane complexes.

Authors:  Xin Yang; Shuqiang Niu; Toshiko Ichiye; Lai-Sheng Wang
Journal:  J Am Chem Soc       Date:  2004-12-08       Impact factor: 15.419

3.  Sulfur K-edge XAS and DFT calculations on [Fe4S4]2+ clusters: effects of H-bonding and structural distortion on covalency and spin topology.

Authors:  Abhishek Dey; Cara L Roche; Marc A Walters; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-11-14       Impact factor: 5.165

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

Review 5.  Iron-sulfur clusters: nature's modular, multipurpose structures.

Authors:  H Beinert; R H Holm; E Münck
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

6.  S K-edge X-ray absorption studies of tetranuclear iron-sulfur clusters: mu-sulfide bonding and its contribution to electron delocalization.

Authors:  T Glaser; K Rose; S E Shadle; B Hedman; K O Hodgson; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-01-24       Impact factor: 15.419

Review 7.  Iron-sulfur proteins: ancient structures, still full of surprises.

Authors:  H Beinert
Journal:  J Biol Inorg Chem       Date:  2000-02       Impact factor: 3.358

8.  Ligand K-edge X-ray absorption spectroscopy of [Fe4S4]1+,2+,3+ clusters: changes in bonding and electronic relaxation upon redox.

Authors:  Abhishek Dey; Thorsten Glaser; Manon M-J Couture; Lindsay D Eltis; R H Holm; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2004-07-07       Impact factor: 15.419

9.  Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin.

Authors:  Abhishek Dey; Francis E Jenney; Michael W W Adams; Elena Babini; Yasuhiro Takahashi; Keiichi Fukuyama; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

10.  Probing the intrinsic electronic structure of the cubane [4Fe-4S] cluster: nature's favorite cluster for electron transfer and storage.

Authors:  Xue-Bin Wang; Shuqiang Niu; Xin Yang; Saad K Ibrahim; Christopher J Pickett; Toshiko Ichiye; Lai-Sheng Wang
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

  10 in total
  3 in total

1.  Characterization of a unique [FeS] cluster in the electron transfer chain of the oxygen tolerant [NiFe] hydrogenase from Aquifex aeolicus.

Authors:  Maria-Eirini Pandelia; Wolfgang Nitschke; Pascale Infossi; Marie-Thérèse Giudici-Orticoni; Eckhard Bill; Wolfgang Lubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

2.  Insight into the reaction mechanism of lipoyl synthase: a QM/MM study.

Authors:  Geng Dong; Lili Cao; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2017-12-04       Impact factor: 3.358

3.  Assessment of Quantum Mechanical Methods for Copper and Iron Complexes by Photoelectron Spectroscopy.

Authors:  Shuqiang Niu; Dao-Ling Huang; Phuong D Dau; Hong-Tao Liu; Lai-Sheng Wang; Toshiko Ichiye
Journal:  J Chem Theory Comput       Date:  2014-01-22       Impact factor: 6.006

  3 in total

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