Literature DB >> 19378171

Sequential chromatin immunoprecipitation protocol: ChIP-reChIP.

Mayra Furlan-Magaril1, Héctor Rincón-Arano, Félix Recillas-Targa.   

Abstract

Chromatin immunoprecipitation has been widely used to determine the status of histone covalent modifications and also to investigate DNA-protein and protein-protein associations to a particular genomic location in vivo. Generally, DNA regulatory elements nucleate the interaction of several transcription factors in conjunction with ubiquitous and/or tissue-specific cofactors in order to regulate gene transcription. Therefore, it has become relevant to determine the cohabitation of several proteins in a particular developmental stage and cell type. Furthermore, multiple post-translational histone modifications can be analyzed on the same genomic location with the aim of deciphering the combinatorial pattern of histone modifications associated to specific transcriptional stages during cell commitment. Here we describe the ChIP-reChIP assay that represents a direct strategy to determine the in vivo colocalization of proteins interacting or in close contact in a chromatinized template on the basis of double and independent rounds of immunoprecipitations with high-quality ChIP grade antibodies.

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Year:  2009        PMID: 19378171     DOI: 10.1007/978-1-60327-015-1_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  41 in total

1.  SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers.

Authors:  Matthew R Hass; Hien-Haw Liow; Xiaoting Chen; Ankur Sharma; Yukiko U Inoue; Takayoshi Inoue; Ashley Reeb; Andrew Martens; Mary Fulbright; Saravanan Raju; Michael Stevens; Scott Boyle; Joo-Seop Park; Matthew T Weirauch; Michael R Brent; Raphael Kopan
Journal:  Mol Cell       Date:  2015-08-06       Impact factor: 17.970

2.  Homeodomain protein otp and activity-dependent splicing modulate neuronal adaptation to stress.

Authors:  Liat Amir-Zilberstein; Janna Blechman; Yehezkel Sztainberg; William H J Norton; Adriana Reuveny; Nataliya Borodovsky; Maayan Tahor; Joshua L Bonkowsky; Laure Bally-Cuif; Alon Chen; Gil Levkowitz
Journal:  Neuron       Date:  2012-01-26       Impact factor: 17.173

3.  Interaction of E2F7 transcription factor with E2F1 and C-terminal-binding protein (CtBP) provides a mechanism for E2F7-dependent transcription repression.

Authors:  Beiyu Liu; Igor Shats; Steven P Angus; Michael L Gatza; Joseph R Nevins
Journal:  J Biol Chem       Date:  2013-07-13       Impact factor: 5.157

4.  Synergistic induction of galectin-1 by CCAAT/enhancer binding protein alpha and hypoxia-inducible factor 1alpha and its role in differentiation of acute myeloid leukemic cells.

Authors:  Xu-Yun Zhao; Ke-Wen Zhao; Yi Jiang; Meng Zhao; Guo-Qiang Chen
Journal:  J Biol Chem       Date:  2011-08-31       Impact factor: 5.157

Review 5.  DNA-protein interaction: identification, prediction and data analysis.

Authors:  Abbasali Emamjomeh; Darush Choobineh; Behzad Hajieghrari; Nafiseh MahdiNezhad; Amir Khodavirdipour
Journal:  Mol Biol Rep       Date:  2019-03-26       Impact factor: 2.316

6.  Mechanism and significance of changes in glutamate-cysteine ligase expression during hepatic fibrogenesis.

Authors:  Komal Ramani; Maria Lauda Tomasi; Heping Yang; Kwangsuk Ko; Shelly C Lu
Journal:  J Biol Chem       Date:  2012-08-31       Impact factor: 5.157

7.  Co-ChIP enables genome-wide mapping of histone mark co-occurrence at single-molecule resolution.

Authors:  Assaf Weiner; David Lara-Astiaso; Vladislav Krupalnik; Ohad Gafni; Eyal David; Deborah R Winter; Jacob H Hanna; Ido Amit
Journal:  Nat Biotechnol       Date:  2016-07-25       Impact factor: 54.908

8.  Two-Step Coimmunoprecipitation (TIP) Enables Efficient and Highly Selective Isolation of Native Protein Complexes.

Authors:  Maria Rita Sciuto; Uwe Warnken; Martina Schnölzer; Cecilia Valvo; Lidia Brunetto; Alessandra Boe; Mauro Biffoni; Peter H Krammer; Ruggero De Maria; Tobias L Haas
Journal:  Mol Cell Proteomics       Date:  2017-12-07       Impact factor: 5.911

9.  Creb1-Mecp2-(m)CpG complex transactivates postnatal murine neuronal glucose transporter isoform 3 expression.

Authors:  Yongjun Chen; Bo-Chul Shin; Shanthie Thamotharan; Sherin U Devaskar
Journal:  Endocrinology       Date:  2013-03-14       Impact factor: 4.736

10.  Mechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b.

Authors:  Lei Zeng; Qiang Zhang; Side Li; Alexander N Plotnikov; Martin J Walsh; Ming-Ming Zhou
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

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