Literature DB >> 19378153

DNA sequence polymorphism analysis using DnaSP.

Julio Rozas1.   

Abstract

The analysis of DNA sequence polymorphisms and SNPs (single nucleotide polymorphisms) can provide insights into the evolutionary forces acting on populations and species. Available population-genetic methods, and particularly those based on the coalescent theory, have become the primary framework to analyze such DNA polymorphism data. Here, I explain some essential analytical methods for interpreting DNA polymorphism data and also describe the basic functionalities of the DnaSP software. DnaSP is a multi-propose program that allows conducting exhaustive DNA polymorphism analysis using a graphical user-friendly interface.

Mesh：

Year:  2009        PMID： 19378153     DOI： 10.1007/978-1-59745-251-9_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  90 in total

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Journal:  J Clin Microbiol       Date:  2011-12-07       Impact factor: 5.948

2.  Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition.

Authors:  Peter W Bergholz; Jesse D Noar; Daniel H Buckley
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3.  Analyses of sequence polymorphism and haplotype diversity of LEAFY genes revealed post-domestication selection in the Chinese elite maize inbred lines.

Authors:  Zefeng Yang; Enying Zhang; Jing Li; Ying Jiang; Yifan Wang; Yunyun Hu; Chenwu Xu
Journal:  Mol Biol Rep       Date:  2014-01-01       Impact factor: 2.316

4.  Influence of host phylogeographic patterns and incomplete lineage sorting on within-species genetic variability in Wigglesworthia species, obligate symbionts of tsetse flies.

Authors:  Rebecca E Symula; Ian Marpuri; Robert D Bjornson; Loyce Okedi; Jon Beadell; Uzma Alam; Serap Aksoy; Adalgisa Caccone
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

Review 5.  Microbial sequence typing in the genomic era.

Authors:  Marcos Pérez-Losada; Miguel Arenas; Eduardo Castro-Nallar
Journal:  Infect Genet Evol       Date:  2017-09-21       Impact factor: 3.342

6.  Restriction to gene flow is associated with changes in the molecular basis of pyrethroid resistance in the malaria vector Anopheles funestus.

Authors:  Kayla G Barnes; Helen Irving; Martin Chiumia; Themba Mzilahowa; Michael Coleman; Janet Hemingway; Charles S Wondji
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-21       Impact factor: 11.205

7.  Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster.

Authors:  Amanda Glaser-Schmitt; Ana Catalán; John Parsch
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

8.  Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle.

Authors:  Christopher M Seabury; Paul M Seabury; Jared E Decker; Robert D Schnabel; Jeremy F Taylor; James E Womack
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

9.  Diachronic analysis of genetic diversity in rice landraces under on-farm conservation in Yunnan, China.

Authors:  Di Cui; Jinmei Li; Cuifeng Tang; Xinxiang A; Tengqiong Yu; Xiaoding Ma; Enlai Zhang; Guilan Cao; Furong Xu; Yongli Qiao; Luyuan Dai; Longzhi Han
Journal:  Theor Appl Genet       Date:  2016-01       Impact factor: 5.699

10.  Allele frequency-based and polymorphism-versus-divergence indices of balancing selection in a new filtered set of polymorphic genes in Plasmodium falciparum.

Authors:  Lynette Isabella Ochola; Kevin K A Tetteh; Lindsay B Stewart; Victor Riitho; Kevin Marsh; David J Conway
Journal:  Mol Biol Evol       Date:  2010-05-09       Impact factor: 16.240
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