Literature DB >> 19377278

Metal binding sheds light on mechanisms of amyloid assembly.

Matthew F Calabrese1, Andrew D Miranker.   

Abstract

Beta-2 microglobulin (beta2m) is the protein responsible for amyloid deposition in Dialysis-Related Amyloidosis (DRA). Aggregation can be induced by various solution conditions including exposure to divalent metal, incubation at acidic pH, and limited proteolysis. Using Cu(2+) as a trigger, we have trapped, isolated, and crystallized a stable oligomer of beta2m that is populated under amyloidogenic solution conditions (Calabrese et al. Nat Struct Mol Biol 2008; 15:965-71). This structure reveals that Cu(2+)-binding is associated with dramatic conformational rearrangements. This has allowed us to postulate a set of structural changes common to all beta2m aggregation pathways. Cu(2+) serves as a potential trigger in other aggregation systems such as Abeta, alpha-synuclein, and mammalian Prion (PrP). A comparison of Cu(2+) binding to beta2m and PrP reveals common features. Therefore, in addition to providing insight into DRA, induction of structure by Cu(2+) binding appears to be a recurring structural motif for pathological changes in conformation.

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Year:  2009        PMID: 19377278      PMCID: PMC2676736          DOI: 10.4161/pri.3.1.8601

Source DB:  PubMed          Journal:  Prion        ISSN: 1933-6896            Impact factor:   3.931


  43 in total

1.  An accidental breach of a protein's natural defenses.

Authors:  Christopher M Dobson
Journal:  Nat Struct Mol Biol       Date:  2006-04       Impact factor: 15.369

2.  Formation of a stable oligomer of beta-2 microglobulin requires only transient encounter with Cu(II).

Authors:  Matthew F Calabrese; Andrew D Miranker
Journal:  J Mol Biol       Date:  2006-12-19       Impact factor: 5.469

Review 3.  The chemistry of copper binding to PrP: is there sufficient evidence to elucidate a role for copper in protein function?

Authors:  Paul Davies; David R Brown
Journal:  Biochem J       Date:  2008-03-01       Impact factor: 3.857

4.  Nuclear magnetic resonance characterization of the refolding intermediate of beta2-microglobulin trapped by non-native prolyl peptide bond.

Authors:  Atsushi Kameda; Masaru Hoshino; Takashi Higurashi; Satoshi Takahashi; Hironobu Naiki; Yuji Goto
Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

5.  Copper and zinc promote interactions between membrane-anchored peptides of the metal binding domain of the prion protein.

Authors:  Angela G Kenward; Libero J Bartolotti; Colin S Burns
Journal:  Biochemistry       Date:  2007-03-20       Impact factor: 3.162

Review 6.  Copper and the prion protein: methods, structures, function, and disease.

Authors:  Glenn L Millhauser
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

7.  A native to amyloidogenic transition regulated by a backbone trigger.

Authors:  Catherine M Eakin; Andrea J Berman; Andrew D Miranker
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

8.  Using mass spectrometry to study copper-protein binding under native and non-native conditions: beta-2-microglobulin.

Authors:  Jihyeon Lim; Richard W Vachet
Journal:  Anal Chem       Date:  2004-07-01       Impact factor: 6.986

9.  Cu(II) organizes beta-2-microglobulin oligomers but is released upon amyloid formation.

Authors:  Kwasi Antwi; Maura Mahar; Rapole Srikanth; Mark R Olbris; Julian F Tyson; Richard W Vachet
Journal:  Protein Sci       Date:  2008-02-27       Impact factor: 6.725

10.  Amyloid formation under physiological conditions proceeds via a native-like folding intermediate.

Authors:  Thomas R Jahn; Martin J Parker; Steve W Homans; Sheena E Radford
Journal:  Nat Struct Mol Biol       Date:  2006-02-19       Impact factor: 15.369

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  18 in total

1.  Identifying Zn-bound histidine residues in metalloproteins using hydrogen-deuterium exchange mass spectrometry.

Authors:  Jia Dong; Katie L Callahan; Nicholas B Borotto; Richard W Vachet
Journal:  Anal Chem       Date:  2013-12-13       Impact factor: 6.986

2.  No association of LOXL1 gene polymorphisms with Alzheimer's disease.

Authors:  Alexandra Abramsson; Sara Landgren; Madeleine Zetterberg; Mona Seibt Palmer; Lennart Minthon; Deborah R Gustafson; Ingmar Skoog; Kaj Blennow; Henrik Zetterberg
Journal:  Neuromolecular Med       Date:  2011-05-11       Impact factor: 3.843

3.  How one bad protein spoils the barrel: structural details of β2-microglobulin amyloidogenicity.

Authors:  Lila M Gierasch
Journal:  Mol Cell       Date:  2011-01-21       Impact factor: 17.970

4.  Increased β-Sheet Dynamics and D-E Loop Repositioning Are Necessary for Cu(II)-Induced Amyloid Formation by β-2-Microglobulin.

Authors:  Nicholas B Borotto; Zhe Zhang; Jia Dong; Brittney Burant; Richard W Vachet
Journal:  Biochemistry       Date:  2017-02-16       Impact factor: 3.162

5.  Delineating the conformational elements responsible for Cu(2+)-induced oligomerization of beta-2 microglobulin.

Authors:  Dorottya V Blaho; Andrew D Miranker
Journal:  Biochemistry       Date:  2009-07-21       Impact factor: 3.162

6.  Measuring the Energy Barrier of the Structural Change That Initiates Amyloid Formation.

Authors:  Blaise G Arden; Nicholas B Borotto; Brittney Burant; William Warren; Christine Akiki; Richard W Vachet
Journal:  Anal Chem       Date:  2020-03-17       Impact factor: 6.986

7.  Copper binding to beta-2-microglobulin and its pre-amyloid oligomers.

Authors:  Rapole Srikanth; Vanessa Leah Mendoza; Juma D Bridgewater; Guanshi Zhang; Richard W Vachet
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

8.  Visualizing and trapping transient oligomers in amyloid assembly pathways.

Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
Journal:  Biophys Chem       Date:  2020-11-10       Impact factor: 2.352

9.  Conformational conversion during amyloid formation at atomic resolution.

Authors:  Timo Eichner; Arnout P Kalverda; Gary S Thompson; Steve W Homans; Sheena E Radford
Journal:  Mol Cell       Date:  2011-01-21       Impact factor: 17.970

Review 10.  Understanding the complex mechanisms of β2-microglobulin amyloid assembly.

Authors:  Timo Eichner; Sheena E Radford
Journal:  FEBS J       Date:  2011-06-13       Impact factor: 5.542

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