Literature DB >> 19374985

Chapter 9. Synthetic probes for polyketide and nonribosomal peptide biosynthetic enzymes.

Jordan L Meier1, Michael D Burkart.   

Abstract

Polyketides and nonribosomal peptides constitute two classes of small molecule natural products that are well-known for their ability to impact important biological processes in a multitude of ways. The modular biosynthetic enzymes responsible for production of these compounds (PKS and NRPS enzymes) have been the subject of extensive genetic, biochemical, and structural characterization, in part due to the potential utility their successful reengineering may have for the production of new therapeutics. In this chapter, we provide background as well as specific techniques in which synthetically produced small molecule probes have been applied to help better understand the mechanism and structure of PKS and NRPS biosynthetic pathways, as well as to help streamline their discovery process. The continued development and application of these methods has the potential to greatly complement our current approaches to the study of natural product biosynthesis.

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Year:  2009        PMID: 19374985     DOI: 10.1016/S0076-6879(09)04809-5

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  7 in total

Review 1.  Engineering the acyltransferase substrate specificity of assembly line polyketide synthases.

Authors:  Briana J Dunn; Chaitan Khosla
Journal:  J R Soc Interface       Date:  2013-05-29       Impact factor: 4.118

Review 2.  The phosphopantetheinyl transferases: catalysis of a post-translational modification crucial for life.

Authors:  Joris Beld; Eva C Sonnenschein; Christopher R Vickery; Joseph P Noel; Michael D Burkart
Journal:  Nat Prod Rep       Date:  2014-01       Impact factor: 13.423

3.  Mechanism-based cross-linking probes capture the Escherichia coli ketosynthase FabB in conformationally distinct catalytic states.

Authors:  Aochiu Chen; Jeffrey T Mindrebo; Tony D Davis; Woojoo E Kim; Yohei Katsuyama; Ziran Jiang; Yasuo Ohnishi; Joseph P Noel; Michael D Burkart
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-08-30       Impact factor: 5.699

4.  Modeling linear and cyclic PKS intermediates through atom replacement.

Authors:  Gaurav Shakya; Heriberto Rivera; D John Lee; Matt J Jaremko; James J La Clair; Daniel T Fox; Robert W Haushalter; Andrew J Schaub; Joel Bruegger; Jesus F Barajas; Alexander R White; Parminder Kaur; Emily R Gwozdziowski; Fiona Wong; Shiou-Chuan Tsai; Michael D Burkart
Journal:  J Am Chem Soc       Date:  2014-11-19       Impact factor: 15.419

5.  In silico methods for linking genes and secondary metabolites: The way forward.

Authors:  Shradha Khater; Swadha Anand; Debasisa Mohanty
Journal:  Synth Syst Biotechnol       Date:  2016-04-01

Review 6.  Probing the structure and function of acyl carrier proteins to unlock the strategic redesign of type II polyketide biosynthetic pathways.

Authors:  Ariana Sulpizio; Callie E W Crawford; Rebecca S Koweek; Louise K Charkoudian
Journal:  J Biol Chem       Date:  2021-01-23       Impact factor: 5.157

7.  Phylogenetic study of polyketide synthases and nonribosomal peptide synthetases involved in the biosynthesis of mycotoxins.

Authors:  Antonia Gallo; Massimo Ferrara; Giancarlo Perrone
Journal:  Toxins (Basel)       Date:  2013-04-19       Impact factor: 4.546

  7 in total

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