Literature DB >> 19368405

Infrared multiple photon dissociation spectroscopy of cationized asparagine: effects of metal cation size on gas-phase conformation.

A L Heaton1, V N Bowman, J Oomens, J D Steill, P B Armentrout.   

Abstract

Gas-phase structures of cationized asparagine (Asn) including complexes with Li(+), Na(+), K(+), Rb(+), Cs(+), and Ba(2+), as well as protonated Asn, are examined by infrared multiple photon dissociation (IRMPD) action spectroscopy utilizing light generated by a free electron laser. Experimental spectra for the alkali metal cation complexes exhibit systematic trends, whereas spectra for Ba(2+)(Asn) and H(+)(Asn) are more distinct. To identify the structures formed experimentally, measured IRMPD spectra are compared to spectra calculated at a B3LYP/6-311+G(d,p) level with several effective core potentials and basis sets evaluated for the heavy metal systems. The dominant conformation ascertained for complexes with the smaller metal cations, Li(+)(Asn) and Na(+)(Asn), is a charge-solvated, tridentate [N,CO,CO] structure that binds the metal cation with the amine group of the amino acid backbone and to the carbonyl oxygen atoms of the backbone and amino acid side chain. For the larger alkali metal cation complexes, K(+)(Asn), Rb(+)(Asn), and Cs(+)(Asn), an additional charge-solvated, tridentate [COOH,CO] structure that binds the metal cation with the two oxygen atoms of the backbone carboxylic acid group and the carbonyl oxygen atom of the Asn side chain may also be present. The Ba(2+)(Asn) spectrum is characteristic of a single charge-solvated [N,CO,CO] conformation, in contrast to Gly, Trp, Arg, Gln, Pro, Ser, Val, and Glu, which all take on a zwitterionic structure when complexed to Ba(2+). In no case do the cationized Asn complexes show definitive evidence of forming a zwitterionic structure in the complexes studied here. For H(+)(Asn), a mixture of two [N,CO] structures, which differ only in the orientation the side chain and are calculated to be nearly identical in energy, explains the experimental spectrum well.

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Year:  2009        PMID: 19368405     DOI: 10.1021/jp9008064

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

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Authors:  B S Fales; N O Fujamade; J Oomens; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2011-08-06       Impact factor: 3.109

2.  IRPD spectroscopy and ensemble measurements: effects of different data acquisition and analysis methods.

Authors:  James S Prell; Jeremy T O'Brien; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2010-01-25       Impact factor: 3.109

3.  Conformational analysis of glutamic acid: a density functional approach using implicit continuum solvent model.

Authors:  Başak Turan; Cenk Selçuki
Journal:  J Mol Model       Date:  2014-08-19       Impact factor: 1.810

4.  Thermodynamics and mechanism of protonated asparagine decomposition.

Authors:  Amy L Heaton; Peter B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2009-01-09       Impact factor: 3.109

5.  Infrared Multiple Photon Dissociation Spectroscopy of Cationized Canavanine: Side-Chain Substitution Influences Gas-Phase Zwitterion Formation.

Authors:  Zachary M Smith; Vincent Steinmetz; Jonathan Martens; Jos Oomens; John C Poutsma
Journal:  Int J Mass Spectrom       Date:  2017-09-04       Impact factor: 1.986

6.  Vibrational Spectroscopy of Homo- and Heterochiral Amino Acid Dimers: Conformational Landscapes.

Authors:  Haolu Wang; Matthias Heger; Mohamad H Al-Jabiri; Yunjie Xu
Journal:  Molecules       Date:  2021-12-22       Impact factor: 4.411

  6 in total

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