Literature DB >> 19366993

Molecular origin and functional consequences of digital signaling and hysteresis during Ras activation in lymphocytes.

Arup K Chakraborty1, Jayajit Das, Julie Zikherman, Ming Yang, Christopher C Govern, Mary Ho, Arthur Weiss, Jeroen Roose.   

Abstract

Activation of Ras proteins underlies functional decisions in diverse cell types. Two molecules, Ras-GRP and SOS (Ras-guanine nucleotide-releasing protein and Son of Sevenless, respectively), catalyze Ras activation in lymphocytes. Binding of active Ras to the allosteric pocket of SOS markedly increases the activity of SOS. Thus, there is a positive feedback loop regulating SOS. Combining in silico and in vitro studies, we demonstrate that "digital" signaling in lymphocytes (cells are "on" or "off") is predicated on this allosteric regulation of SOS. The SOS feedback loop leads to hysteresis in the dose-response curve, which may enable T cells to exhibit "memory" of past encounters with antigen. Ras activation by Ras-GRP alone is "analog" (a graded increase in activation in response to an increase in the amplitude of the stimulus). We describe how the complementary analog (Ras-GRP) and digital (SOS) pathways act on Ras to efficiently convert analog input to digital output and make predictions regarding the importance of digital signaling in lymphocyte function and development.

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Year:  2009        PMID: 19366993      PMCID: PMC2755093          DOI: 10.1126/scisignal.266pt2

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  10 in total

1.  Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.

Authors:  S Mariana Margarit; Holger Sondermann; Brian E Hall; Bhushan Nagar; Andre Hoelz; Michelle Pirruccello; Dafna Bar-Sagi; John Kuriyan
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

2.  Mutational and kinetic analyses of the GTPase-activating protein (GAP)-p21 interaction: the C-terminal domain of GAP is not sufficient for full activity.

Authors:  P Gideon; J John; M Frech; A Lautwein; R Clark; J E Scheffler; A Wittinghofer
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

3.  Structural analysis of autoinhibition in the Ras activator Son of sevenless.

Authors:  Holger Sondermann; Stephen M Soisson; Sean Boykevisch; Shao-Song Yang; Dafna Bar-Sagi; John Kuriyan
Journal:  Cell       Date:  2004-10-29       Impact factor: 41.582

4.  Regulation of ras signaling dynamics by Sos-mediated positive feedback.

Authors:  Sean Boykevisch; Chen Zhao; Holger Sondermann; Polyxeni Philippidou; Simon Halegoua; John Kuriyan; Dafna Bar-Sagi
Journal:  Curr Biol       Date:  2006-11-07       Impact factor: 10.834

5.  T cell sensing of antigen dose governs interactive behavior with dendritic cells and sets a threshold for T cell activation.

Authors:  Sarah E Henrickson; Thorsten R Mempel; Irina B Mazo; Bai Liu; Maxim N Artyomov; Huan Zheng; Antonio Peixoto; Michael P Flynn; Balimkiz Senman; Tobias Junt; Hing C Wong; Arup K Chakraborty; Ulrich H von Andrian
Journal:  Nat Immunol       Date:  2008-01-20       Impact factor: 25.606

6.  How antigen quantity and quality determine T-cell decisions in lymphoid tissue.

Authors:  Huan Zheng; Bo Jin; Sarah E Henrickson; Alan S Perelson; Ulrich H von Andrian; Arup K Chakraborty
Journal:  Mol Cell Biol       Date:  2008-04-21       Impact factor: 4.272

7.  Origin of the sharp boundary that discriminates positive and negative selection of thymocytes.

Authors:  Ashok Prasad; Julie Zikherman; Jayajit Das; Jeroen P Roose; Arthur Weiss; Arup K Chakraborty
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-19       Impact factor: 11.205

8.  Digital signaling and hysteresis characterize ras activation in lymphoid cells.

Authors:  Jayajit Das; Mary Ho; Julie Zikherman; Christopher Govern; Ming Yang; Arthur Weiss; Arup K Chakraborty; Jeroen P Roose
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

9.  Modeling T cell antigen discrimination based on feedback control of digital ERK responses.

Authors:  Grégoire Altan-Bonnet; Ronald N Germain
Journal:  PLoS Biol       Date:  2005-10-25       Impact factor: 8.029

10.  Requirement for Ras guanine nucleotide releasing protein 3 in coupling phospholipase C-gamma2 to Ras in B cell receptor signaling.

Authors:  Masatsugu Oh-hora; Sachiko Johmura; Ari Hashimoto; Masaki Hikida; Tomohiro Kurosaki
Journal:  J Exp Med       Date:  2003-12-15       Impact factor: 14.307

  10 in total
  16 in total

Review 1.  Signaling in lymphocyte activation.

Authors:  Doreen Cantrell
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-06-01       Impact factor: 10.005

Review 2.  Solving Immunology?

Authors:  Yoram Vodovotz; Ashley Xia; Elizabeth L Read; Josep Bassaganya-Riera; David A Hafler; Eduardo Sontag; Jin Wang; John S Tsang; Judy D Day; Steven H Kleinstein; Atul J Butte; Matthew C Altman; Ross Hammond; Stuart C Sealfon
Journal:  Trends Immunol       Date:  2016-12-13       Impact factor: 16.687

3.  K-RAS GTPase- and B-RAF kinase-mediated T-cell tolerance defects in rheumatoid arthritis.

Authors:  Karnail Singh; Pratima Deshpande; Guangjin Li; Mingcan Yu; Sergey Pryshchep; Mary Cavanagh; Cornelia M Weyand; Jörg J Goronzy
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

Review 4.  T cell receptor signaling kinetics takes the stage.

Authors:  Yuri Sykulev
Journal:  Sci Signal       Date:  2010-12-21       Impact factor: 8.192

5.  Decreased diacylglycerol metabolism enhances ERK activation and augments CD8+ T cell functional responses.

Authors:  Matthew J Riese; Jashanpreet Grewal; Jayajit Das; Tao Zou; Vineet Patil; Arup K Chakraborty; Gary A Koretzky
Journal:  J Biol Chem       Date:  2010-12-07       Impact factor: 5.157

6.  Regulation and Function of the RasGRP Family of Ras Activators in Blood Cells.

Authors:  James C Stone
Journal:  Genes Cancer       Date:  2011-03

7.  Raf family kinases: old dogs have learned new tricks.

Authors:  David Matallanas; Marc Birtwistle; David Romano; Armin Zebisch; Jens Rauch; Alexander von Kriegsheim; Walter Kolch
Journal:  Genes Cancer       Date:  2011-03

8.  IL-7- and IL-15-mediated TCR sensitization enables T cell responses to self-antigens.

Authors:  Pratima Deshpande; Mary M Cavanagh; Sabine Le Saux; Karnail Singh; Cornelia M Weyand; Jörg J Goronzy
Journal:  J Immunol       Date:  2013-01-16       Impact factor: 5.422

9.  Activation of extracellular signal-regulated kinase but not of p38 mitogen-activated protein kinase pathways in lymphocytes requires allosteric activation of SOS.

Authors:  Jesse E Jun; Ming Yang; Hang Chen; Arup K Chakraborty; Jeroen P Roose
Journal:  Mol Cell Biol       Date:  2013-04-15       Impact factor: 4.272

10.  Allosteric autoactivation of SOS and its kinetic mechanism.

Authors:  Hanh My Hoang; Hope Gloria Umutesi; Jongyun Heo
Journal:  Small GTPases       Date:  2019-04-13
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