Literature DB >> 19364119

Collisions or electrons? Protein sequence analysis in the 21st century.

Joshua J Coon1.   

Abstract

How dissociation is effected determines the upstream sample handling whereas the spectral features it produces regulate the downstream informatics approach. (To listen to a podcast about this feature, please go to the Analytical Chemistry website at pubs.acs.org/journal/ancham.

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Year:  2009        PMID： 19364119      PMCID： PMC2714553          DOI： 10.1021/ac802330b

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


  51 in total

1.  Shotgun identification of protein modifications from protein complexes and lens tissue.

Authors:  Michael J MacCoss; W Hayes McDonald; Anita Saraf; Rovshan Sadygov; Judy M Clark; Joseph J Tasto; Kathleen L Gould; Dirk Wolters; Michael Washburn; Avery Weiss; John I Clark; John R Yates
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 2.  Top-down proteomics.

Authors:  Neil L Kelleher
Journal:  Anal Chem       Date:  2004-06-01       Impact factor: 6.986

3.  Implementation of ion/ion reactions in a quadrupole/time-of-flight tandem mass spectrometer.

Authors:  Yu Xia; Paul A Chrisman; David E Erickson; Jian Liu; Xiaorong Liang; Frank A Londry; Min J Yang; Scott A McLuckey
Journal:  Anal Chem       Date:  2006-06-15       Impact factor: 6.986

4.  Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors.

Authors:  Danielle L Swaney; Graeme C McAlister; Matthew Wirtala; Jae C Schwartz; John E P Syka; Joshua J Coon
Journal:  Anal Chem       Date:  2007-01-15       Impact factor: 6.986

5.  Extending top-down mass spectrometry to proteins with masses greater than 200 kilodaltons.

Authors:  Xuemei Han; Mi Jin; Kathrin Breuker; Fred W McLafferty
Journal:  Science       Date:  2006-10-06       Impact factor: 47.728

6.  Implementation of electron-transfer dissociation on a hybrid linear ion trap-orbitrap mass spectrometer.

Authors:  Graeme C McAlister; Doug Phanstiel; David M Good; W Travis Berggren; Joshua J Coon
Journal:  Anal Chem       Date:  2007-04-19       Impact factor: 6.986

7.  Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini.

Authors:  Sean D Taverna; Beatrix M Ueberheide; Yifan Liu; Alan J Tackett; Robert L Diaz; Jeffrey Shabanowitz; Brian T Chait; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

8.  Fragmentation of phosphopeptides in an ion trap mass spectrometer.

Authors:  J P DeGnore; J Qin
Journal:  J Am Soc Mass Spectrom       Date:  1998-11       Impact factor: 3.109

9.  Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.

Authors:  Nelly Khidekel; Scott B Ficarro; Peter M Clark; Marian C Bryan; Danielle L Swaney; Jessica E Rexach; Yi E Sun; Joshua J Coon; Eric C Peters; Linda C Hsieh-Wilson
Journal:  Nat Chem Biol       Date:  2007-05-13       Impact factor: 15.040

10.  Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Authors:  An Chi; Curtis Huttenhower; Lewis Y Geer; Joshua J Coon; John E P Syka; Dina L Bai; Jeffrey Shabanowitz; Daniel J Burke; Olga G Troyanskaya; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-07       Impact factor: 11.205
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  71 in total

1.  The use of chromium(III) to supercharge peptides by protonation at low basicity sites.

Authors:  Changgeng Feng; Juliette J Commodore; Carolyn J Cassady
Journal:  J Am Soc Mass Spectrom       Date:  2014-11-14       Impact factor: 3.109

2.  The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.

Authors:  Sangtae Kim; Nikolai Mischerikow; Nuno Bandeira; J Daniel Navarro; Louis Wich; Shabaz Mohammed; Albert J R Heck; Pavel A Pevzner
Journal:  Mol Cell Proteomics       Date:  2010-09-09       Impact factor: 5.911

3.  Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling.

Authors:  Simone Nicolardi; Magnus Palmblad; Hans Dalebout; Marco Bladergroen; Rob A E M Tollenaar; André M Deelder; Yuri E M van der Burgt
Journal:  J Am Soc Mass Spectrom       Date:  2010-05-12       Impact factor: 3.109

4.  Options and considerations when selecting a quantitative proteomics strategy.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2010-07-09       Impact factor: 54.908

5.  Cα-C bond cleavage of the peptide backbone in MALDI in-source decay using salicylic acid derivative matrices.

Authors:  Daiki Asakawa; Mitsuo Takayama
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-19       Impact factor: 3.109

6.  Implementing photodissociation in an Orbitrap mass spectrometer.

Authors:  Lisa A Vasicek; Aaron R Ledvina; Jared Shaw; Jens Griep-Raming; Michael S Westphall; Joshua J Coon; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-09       Impact factor: 3.109

7.  Periodic patterns in distributions of peptide masses.

Authors:  Shane L Hubler; Gheorghe Craciun
Journal:  Biosystems       Date:  2012-05-08       Impact factor: 1.973

Review 8.  Natural proteins: Sources, isolation, characterization and applications.

Authors:  Jitendra Y Nehete; Rajendra S Bhambar; Minal R Narkhede; Sonali R Gawali
Journal:  Pharmacogn Rev       Date:  2013-07

9.  High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.

Authors:  James A Madsen; Hua Xu; Michelle R Robinson; Andrew P Horton; Jared B Shaw; David K Giles; Tamer S Kaoud; Kevin N Dalby; M Stephen Trent; Jennifer S Brodbelt
Journal:  Mol Cell Proteomics       Date:  2013-05-21       Impact factor: 5.911

Review 10.  Top Down proteomics: facts and perspectives.

Authors:  Adam D Catherman; Owen S Skinner; Neil L Kelleher
Journal:  Biochem Biophys Res Commun       Date:  2014-02-17       Impact factor: 3.575
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