Literature DB >> 19363073

First gene cassettes of integrons as targets in finding adaptive genes in metagenomes.

Lionel Huang1, Christine Cagnon, Pierre Caumette, Robert Duran.   

Abstract

The first gene cassettes of integrons are involved in the last adaptation response to changing conditions and are also the most expressed. We propose a rapid method for the selection of clones carrying an integron first gene cassette that is useful for finding adaptive genes in environmental metagenomic libraries.

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Year:  2009        PMID： 19363073      PMCID： PMC2687265          DOI： 10.1128/AEM.02394-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  29 in total

1.  Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction.

Authors:  S Precigou; P Goulas; R Duran
Journal:  FEMS Microbiol Lett       Date:  2001-10-16       Impact factor: 2.742

2.  Gene cassette PCR: sequence-independent recovery of entire genes from environmental DNA.

Authors:  H W Stokes; A J Holmes; B S Nield; M P Holley; K M Nevalainen; B C Mabbutt; M R Gillings
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

3.  Efficiency of recombination reactions catalyzed by class 1 integron integrase IntI1.

Authors:  C M Collis; G D Recchia; M J Kim; H W Stokes; R M Hall
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

4.  Recovery of new integron classes from environmental DNA.

Authors:  B S Nield; A J Holmes; M R Gillings; G D Recchia; B C Mabbutt; K M Nevalainen; H W Stokes
Journal:  FEMS Microbiol Lett       Date:  2001-02-05       Impact factor: 2.742

5.  Type II topoisomerase quinolone resistance-determining regions of Aeromonas caviae, A. hydrophila, and A. sobria complexes and mutations associated with quinolone resistance.

Authors:  Marisol Goñi-Urriza; Corinne Arpin; Michèle Capdepuy; Véronique Dubois; Pierre Caumette; Claudine Quentin
Journal:  Antimicrob Agents Chemother       Date:  2002-02       Impact factor: 5.191

6.  Integron-encoded IntI integrases preferentially recognize the adjacent cognate attI site in recombination with a 59-be site.

Authors:  Christina M Collis; Mi-Jurng Kim; H W Stokes; Ruth M Hall
Journal:  Mol Microbiol       Date:  2002-12       Impact factor: 3.501

7.  The gene cassette metagenome is a basic resource for bacterial genome evolution.

Authors:  Andrew J Holmes; Michael R Gillings; Blair S Nield; Bridget C Mabbutt; K M Helena Nevalainen; H W Stokes
Journal:  Environ Microbiol       Date:  2003-05       Impact factor: 5.491

8.  Recovery of diverse genes for class 1 integron-integrases from environmental DNA samples.

Authors:  Michael R Gillings; Samyuktha Krishnan; Paul J Worden; Simon A Hardwick
Journal:  FEMS Microbiol Lett       Date:  2008-08-01       Impact factor: 2.742

9.  DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Authors:  J F Heidelberg; J A Eisen; W C Nelson; R A Clayton; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; L Umayam; S R Gill; K E Nelson; T D Read; H Tettelin; D Richardson; M D Ermolaeva; J Vamathevan; S Bass; H Qin; I Dragoi; P Sellers; L McDonald; T Utterback; R D Fleishmann; W C Nierman; O White; S L Salzberg; H O Smith; R R Colwell; J J Mekalanos; J C Venter; C M Fraser
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

10.  Database resources of the National Center for Biotechnology Information: update.

Authors:  David L Wheeler; Deanna M Church; Ron Edgar; Scott Federhen; Wolfgang Helmberg; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tugba O Suzek; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971
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  6 in total

1.  The influence of the accessory genome on bacterial pathogen evolution.

Authors:  Robert W Jackson; Boris Vinatzer; Dawn L Arnold; Steve Dorus; Jesús Murillo
Journal:  Mob Genet Elements       Date:  2011-05

2.  Microbial ecology of hydrocarbon-polluted coastal sediments.

Authors:  Robert Duran; Philippe Cuny; Patricia Bonin; Cristiana Cravo-Laureau
Journal:  Environ Sci Pollut Res Int       Date:  2015-09-18       Impact factor: 4.223

3.  Co-assortment in integron-associated gene cassette assemblages in environmental DNA samples.

Authors:  Carolyn A Michael; Nigel R Andrew
Journal:  BMC Genet       Date:  2010-08-10       Impact factor: 2.797

4.  Gene cassette transcription in a large integron-associated array.

Authors:  Carolyn A Michael; Maurizio Labbate
Journal:  BMC Genet       Date:  2010-09-15       Impact factor: 2.797

5.  Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays.

Authors:  Hosam Elsaied; Hatch W Stokes; Keiko Kitamura; Yasurou Kurusu; Yoichi Kamagata; Akihiko Maruyama
Journal:  ISME J       Date:  2011-01-20       Impact factor: 10.302

6.  Integron involvement in environmental spread of antibiotic resistance.

Authors:  Thibault Stalder; Olivier Barraud; Magali Casellas; Christophe Dagot; Marie-Cécile Ploy
Journal:  Front Microbiol       Date:  2012-04-09       Impact factor: 5.640
  6 in total

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