| Literature DB >> 19360113 |
Samir S Deeb1, John D Brunzell.
Abstract
The Diabetes Control and Complications Trial (DCCT) involved intensive diabetes therapy of subjects with type 1 diabetes mellitus (T1DM) for an average period of 6.5 years. A subset of these subjects gained excessive weight. We tested for association of polymorphisms in 8 candidate genes with the above trait. We found the Gly482Ser polymorphism in the peroxisome proliferator-activated receptor γ coactivator-1α (PGC1α) to be significantly associated with weight gain in males (P = .0045) but not in females. The Ser allele was associated with greater weight gain than the Gly allele (P = .005). Subjects with a family history of type 2 diabetes mellitus (T2DM) were more common among those who gained excessive weight. We conclude that T2DM and the Gly482Ser polymorphism in PGC1α contribute to the effect of intensive diabetes therapy on weight gain in males with T1DM.Entities:
Year: 2009 PMID: 19360113 PMCID: PMC2666270 DOI: 10.1155/2009/649286
Source DB: PubMed Journal: PPAR Res Impact factor: 4.964
Candidate genes and SNPs analyzed for association with excess weight gain with intensive diabetes therapy. Genotyping was performed using ABI TaqMan assays with the indicated ABI identification numbers (custom, made to order). Minor allele frequencies are for Caucasian populations derived from published data and the SNP database (http://www.ncbi.nlm.nih.gov/SNP/). PPARG, peroxisome proliferator activated receptor γ; PPARGC1A, peroxisome proliferator-activated receptor γ coactivator-1α; HSD11B1, 11β-hydroxysteroid dehydrogenase 1; GR (NRC31), glucocorticoid receptor; GNB3, G protein β3 subunit; ADIPOQ, adiponectin; NPY, neuropeptide y, FTO (aliases KIAA1752, MGC5149), fat mass, and obesity-associated protein.
| Gene | Chromosomal location | NCBI refSNP number | TaqMan ABI assay ID | Polymorphism | Minor allele frequency |
|---|---|---|---|---|---|
|
| 3p25 | rs1801282 | 1129864 | Pro12Ala (exon 1) | 0.10 |
|
| 4p15.1 | rs8192678 | Custom 1643184 | Gly482Ser T/C (5′ UTR) | 0.34 |
| rs2279525 | 0.31 | ||||
|
| 1q32 | rs2884090 | 2502457 | C/T; intron 4 | 0.21 |
|
| 5q34 | rs6188 | 1046353 | G/T; intron 5 | 0.31 |
| rs11749561 | 178285 | T/C; intron 3 | |||
|
| 12p13 | rs5443 | 2184734 | C825T Silent/AS | 0.30 |
|
| 3q27 | rs266729 | Custom 2412786 | C-377G; promoter | 0.29 |
|
| 7p15.1 | rs5573 | 11164468 | Ser22Ser | 0.44 |
|
| 16q12.2 | rs9939609 | Custom 30090620 | T to A in 3′ UTR | 0.43 |
Genotype and allele frequencies of the variants in candidate genes examined for association with weight gain by DCCT subjects on intensive diabetes therapy. N, number of subjects; the P-values compare genotype and minor allele frequencies between quartile 1 (Q1) and quartile 4 (Q4) of weight gain; NS, statistically not significant. The brackets indicate that heterozygotes and homozygotes for the minor allele were combined for comparisons between quartiles.
| Gene/polymorphism | Frequency in females | Frequency in males | ||||
|---|---|---|---|---|---|---|
| Q1 ( | Q4 ( |
| Q1 ( | Q4 ( |
| |
|
| ||||||
|
| 52 (82.5) | 62 (78.5) | NS | 45 (75.0) | 42 (84.2) | NS |
|
| 11 (17.5) | 17 (21.5) | NS | 15 (25.0) | 9 (17.6) | NS |
|
| 0 (0) | 0 (0) | 0 (0) | 0 (0) | NS | |
| Allele frequency | 0.09 | 0.11 | NS | 0.13 | 0.09 | NS |
|
| ||||||
|
| ||||||
|
| 25 (40.3) | 30 (38.0) | NS | 35 (58.3) | 12 (23.5) | .0054 |
|
|
|
| NS |
|
| .0131 |
|
| ||||||
| Frequency of Ser | 0.37 | 0.35 | NS | 0.23 | 0.45 | .0050 |
|
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|
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|
| 28 (45.2) | 35 (44.9) | NS | 25 (42.3) | 28 (54.9) | NS |
|
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|
| NS |
|
| NS |
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| Frequency
of | 0.33 | 0.30 | NS | 0.35 | 0.27 | NS |
|
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|
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|
| 41 (66.1) | 50 (59.5) | NS | 42 (66.7) | 32 (62.7) | NS |
|
|
|
| NS |
|
| NS |
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| Frequency of | 0.19 | 0.23 | NS | 0.21 | 0.21 | NS |
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|
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|
| 34 (54.8) | 35 (44.3) | NS | 30 (50.0) | 28 (54.9) | NS |
|
|
|
| NS |
|
| NS |
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| Frequency
of | 0.27 | 0.35 | NS | 0.31 | 0.27 | NS |
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|
| 27 (42.2) | 41 (52.6) | NS | 29 (48.3) | 25 (49.0) | NS |
|
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| NS |
|
| NS |
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| Frequency of | 0.35 | 0.26 | NS | 0.33 | 0.27 | NS |
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|
| 32 (52.5) | 49 (62.0) | NS | 32 (53.3) | 30 (58.8) | NS |
|
|
|
| NS |
|
| NS |
|
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| Frequency
of | 0.30 | 0.23 | NS | 0.25 | 0.25 | NS |
|
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|
| 19 (30.6) | 21 (26.6) | NS | 15 (25.0) | 10 (19.6) | NS |
|
|
|
| NS |
|
| NS |
|
| ||||||
| Frequency
of | 0.46 | 0.52 | NS | 0.48 | 0.54 | NS |
|
| ||||||
| FTO | ||||||
|
| 23 (36.0) | 29 (35.0) | NS | 16 (25.4) | 13 (27.1) | NS |
|
| 32 (50.0) | 40 (48.2) | NS | 35 (55.6) | 25 (52.1) | NS |
|
| 9 (14.0) | 14 (17.0) | NS | 12 (19.0) | 10 (20.8) | NS |
| Frequency of | 0.39 | 0.41 | NS | 0.47 | 0.47 | NS |
Figure 1Association of the PPARGC1A Ser482 allele with weight gain in all quartiles of males with T1DM on intensive diabetes therapy. The frequency of the Ser allele in Q1 (N = 126) was 0.23; Q2 (N = 172) was 0.34; Q3 (N = 158) was 0.38; Q4 (N = 102) was 0.45. The Ser allele was significantly associated with a trend for higher weight gain with a P-value of .004 (Chi-square with 3 degrees of freedom), and a P-value of .0004 (trend, Cochran-Armitage).
Figure 2Structure of the PPARGC1A gene showing location of linkage disequilibrium (LD) blocks and sequence polymorphisms.