Literature DB >> 19359576

Sending signals dynamically.

Robert G Smock1, Lila M Gierasch.   

Abstract

Proteins mediate transmission of signals along intercellular and intracellular pathways and between the exterior and the interior of a cell. The dynamic properties of signaling proteins are crucial to their functions. We discuss emerging paradigms for the role of protein dynamics in signaling. A central tenet is that proteins fluctuate among many states on evolutionarily selected energy landscapes. Upstream signals remodel this landscape, causing signaling proteins to transmit information to downstream partners. New methods provide insight into the dynamic properties of signaling proteins at the atomic scale. The next stages in the signaling hierarchy-how multiple signals are integrated and how cellular signaling pathways are organized in space and time-present exciting challenges for the future, requiring bold multidisciplinary approaches.

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Year:  2009        PMID: 19359576      PMCID: PMC2921701          DOI: 10.1126/science.1169377

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  55 in total

1.  Biophysics: proteins hunt and gather.

Authors:  David Eliezer; Arthur G Palmer
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

2.  Conformational entropy in molecular recognition by proteins.

Authors:  Kendra King Frederick; Michael S Marlow; Kathleen G Valentine; A Joshua Wand
Journal:  Nature       Date:  2007-07-19       Impact factor: 49.962

3.  Reassessing a sparse energetic network within a single protein domain.

Authors:  Celestine N Chi; Lisa Elfström; Yao Shi; Tord Snäll; Ake Engström; Per Jemth
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-13       Impact factor: 11.205

4.  The allosteric role of the Ca2+ switch in adhesion and elasticity of C-cadherin.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

5.  Signal transduction via unstructured protein conduits.

Authors:  A Keith Dunker; Vladimir N Uversky
Journal:  Nat Chem Biol       Date:  2008-04       Impact factor: 15.040

Review 6.  Allostery: absence of a change in shape does not imply that allostery is not at play.

Authors:  Chung-Jung Tsai; Antonio del Sol; Ruth Nussinov
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

Review 7.  Bridging from molecular simulation to biochemical networks.

Authors:  Matthias Stein; Razif R Gabdoulline; Rebecca C Wade
Journal:  Curr Opin Struct Biol       Date:  2007-03-28       Impact factor: 6.809

Review 8.  Progress towards understanding the mechanism of cytokinesis in fission yeast.

Authors:  Thomas D Pollard
Journal:  Biochem Soc Trans       Date:  2008-06       Impact factor: 5.407

9.  Understanding NF-kappaB signaling via mathematical modeling.

Authors:  Raymond Cheong; Alexander Hoffmann; Andre Levchenko
Journal:  Mol Syst Biol       Date:  2008-05-06       Impact factor: 11.429

10.  A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction.

Authors:  Jörg Gsponer; John Christodoulou; Andrea Cavalli; Jennifer M Bui; Barbara Richter; Christopher M Dobson; Michele Vendruscolo
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

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  210 in total

1.  Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.

Authors:  Feng Wang; Christopher B Marshall; Kazuo Yamamoto; Guang-Yao Li; Geneviève M C Gasmi-Seabrook; Hitoshi Okada; Tak W Mak; Mitsuhiko Ikura
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Agonism/antagonism switching in allosteric ensembles.

Authors:  Hesam N Motlagh; Vincent J Hilser
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-02       Impact factor: 11.205

3.  Dynamical allosterism in the mechanism of action of DNA mismatch repair protein MutS.

Authors:  Susan N Pieniazek; Manju M Hingorani; D L Beveridge
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

4.  Conformational exchange in a membrane transport protein is altered in protein crystals.

Authors:  Daniel M Freed; Peter S Horanyi; Michael C Wiener; David S Cafiso
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

5.  Periplasmic domain of the sensor-kinase BvgS reveals a new paradigm for the Venus flytrap mechanism.

Authors:  Julien Herrou; Coralie Bompard; René Wintjens; Elian Dupré; Eve Willery; Vincent Villeret; Camille Locht; Rudy Antoine; Françoise Jacob-Dubuisson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

6.  Substrate-modulated thermal fluctuations affect long-range allosteric signaling in protein homodimers: exemplified in CAP.

Authors:  Hedvika Toncrova; Tom C B McLeish
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

7.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

8.  Disordered allostery: lessons from glucocorticoid receptor.

Authors:  Hesam N Motlagh; Jeremy A Anderson; Jing Li; Vincent J Hilser
Journal:  Biophys Rev       Date:  2015-04-23

9.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

10.  Side chain dynamics of carboxyl and carbonyl groups in the catalytic function of Escherichia coli ribonuclease H.

Authors:  Kate A Stafford; Fabien Ferrage; Jae-Hyun Cho; Arthur G Palmer
Journal:  J Am Chem Soc       Date:  2013-11-20       Impact factor: 15.419

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