Literature DB >> 19358215

High-dimensional data analysis: selection of variables, data compression and graphics--application to gene expression.

Jürgen Läuter1, Friedemann Horn, Maciej Rosołowski, Ekkehard Glimm.   

Abstract

The paper presents effective and mathematically exact procedures for selection of variables which are applicable in cases with a very high dimension as, for example, in gene expression analysis. Choosing sets of variables is an important method to increase the power of the statistical conclusions and to facilitate the biological interpretation. For the construction of sets, each single variable is considered as the centre of potential sets of variables. Testing for significance is carried out by means of the Westfall-Young principle based on resampling or by the parametric method of spherical tests. The particular requirements for statistical stability are taken into account; each kind of overfitting is avoided. Thus, high power is attained and the familywise type I error can be kept in spite of the large dimension. To obtain graphical representations by heat maps and curves, a specific data compression technique is applied. Gene expression data from B-cell lymphoma patients serve for the demonstration of the procedures.

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Year:  2009        PMID: 19358215     DOI: 10.1002/bimj.200800207

Source DB:  PubMed          Journal:  Biom J        ISSN: 0323-3847            Impact factor:   2.207


  8 in total

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Journal:  BMC Genomics       Date:  2014-12-19       Impact factor: 3.969

3.  Synergy between PI3K signaling and MYC in Burkitt lymphomagenesis.

Authors:  Sandrine Sander; Dinis P Calado; Lakshmi Srinivasan; Karl Köchert; Baochun Zhang; Maciej Rosolowski; Scott J Rodig; Karlheinz Holzmann; Stephan Stilgenbauer; Reiner Siebert; Lars Bullinger; Klaus Rajewsky
Journal:  Cancer Cell       Date:  2012-08-14       Impact factor: 31.743

4.  MicroRNA-21 targets tumor suppressor genes ANP32A and SMARCA4.

Authors:  K Schramedei; N Mörbt; G Pfeifer; J Läuter; M Rosolowski; J M Tomm; M von Bergen; F Horn; K Brocke-Heidrich
Journal:  Oncogene       Date:  2011-02-14       Impact factor: 9.867

5.  Expression cartography of human tissues using self organizing maps.

Authors:  Henry Wirth; Markus Löffler; Martin von Bergen; Hans Binder
Journal:  BMC Bioinformatics       Date:  2011-07-27       Impact factor: 3.169

6.  Mining SOM expression portraits: feature selection and integrating concepts of molecular function.

Authors:  Henry Wirth; Martin von Bergen; Hans Binder
Journal:  BioData Min       Date:  2012-10-08       Impact factor: 2.522

7.  A general modular framework for gene set enrichment analysis.

Authors:  Marit Ackermann; Korbinian Strimmer
Journal:  BMC Bioinformatics       Date:  2009-02-03       Impact factor: 3.169

8.  Massive transcriptional perturbation in subgroups of diffuse large B-cell lymphomas.

Authors:  Maciej Rosolowski; Jürgen Läuter; Dmitriy Abramov; Hans G Drexler; Michael Hummel; Wolfram Klapper; Roderick A F Macleod; Shoji Pellissery; Friedemann Horn; Reiner Siebert; Markus Loeffler
Journal:  PLoS One       Date:  2013-11-04       Impact factor: 3.240

  8 in total

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