Literature DB >> 19357095

WebGBrowse--a web server for GBrowse.

Ram Podicheti1, Rajesh Gollapudi, Qunfeng Dong.   

Abstract

SUMMARY: The Generic Genome Browser (GBrowse) is one of the most widely used tools for visualizing genomic features along a reference sequence. However, the installation and configuration of GBrowse is not trivial for biologists. We have developed a web server, WebGBrowse that allows users to upload genome annotation in the GFF3 format, configure the display of each genomic feature by simply using a web browser and visualize the configured genomic features with the integrated GBrowse software. AVAILABILITY: WebGBrowse is accessible via http://webgbrowse.cgb.indiana.edu/ and the system is also freely available for local installations.

Mesh：

Year:  2009        PMID： 19357095     DOI： 10.1093/bioinformatics/btp239

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  14 in total

1.  The human gut virome: inter-individual variation and dynamic response to diet.

Authors:  Samuel Minot; Rohini Sinha; Jun Chen; Hongzhe Li; Sue A Keilbaugh; Gary D Wu; James D Lewis; Frederic D Bushman
Journal:  Genome Res       Date:  2011-08-31       Impact factor: 9.043

2.  Choosing a genome browser for a Model Organism Database: surveying the maize community.

Authors:  Taner Z Sen; Lisa C Harper; Mary L Schaeffer; Carson M Andorf; Trent E Seigfried; Darwin A Campbell; Carolyn J Lawrence
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

3.  VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data.

Authors:  Elena S Peterson; Lee Ann McCue; Alexandra C Schrimpe-Rutledge; Jeffrey L Jensen; Hyunjoo Walker; Markus A Kobold; Samantha R Webb; Samuel H Payne; Charles Ansong; Joshua N Adkins; William R Cannon; Bobbie-Jo M Webb-Robertson
Journal:  BMC Genomics       Date:  2012-04-05       Impact factor: 3.969

4.  Genome Maps, a new generation genome browser.

Authors:  Ignacio Medina; Francisco Salavert; Rubén Sanchez; Alejandro de Maria; Roberto Alonso; Pablo Escobar; Marta Bleda; Joaquín Dopazo
Journal:  Nucleic Acids Res       Date:  2013-06-08       Impact factor: 16.971

5.  MGcV: the microbial genomic context viewer for comparative genome analysis.

Authors:  Lex Overmars; Robert Kerkhoven; Roland J Siezen; Christof Francke
Journal:  BMC Genomics       Date:  2013-04-01       Impact factor: 3.969

6.  Transcriptome of the adult female malaria mosquito vector Anopheles albimanus.

Authors:  Jesús Martínez-Barnetche; Rosa E Gómez-Barreto; Marbella Ovilla-Muñoz; Juan Téllez-Sosa; David E García López; Rhoel R Dinglasan; Ceereena Ubaida Mohien; Robert M MacCallum; Seth N Redmond; John G Gibbons; Antonis Rokas; Carlos A Machado; Febe E Cazares-Raga; Lilia González-Cerón; Salvador Hernández-Martínez; Mario H Rodríguez López
Journal:  BMC Genomics       Date:  2012-05-30       Impact factor: 3.969

7.  MEGANTE: a web-based system for integrated plant genome annotation.

Authors:  Hisataka Numa; Takeshi Itoh
Journal:  Plant Cell Physiol       Date:  2013-11-18       Impact factor: 4.927

8.  Reduced ribosomes of the apicoplast and mitochondrion of Plasmodium spp. and predicted interactions with antibiotics.

Authors:  Ankit Gupta; Priyanka Shah; Afreen Haider; Kirti Gupta; Mohammad Imran Siddiqi; Stuart A Ralph; Saman Habib
Journal:  Open Biol       Date:  2014-05       Impact factor: 6.411

9.  Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies.

Authors:  Lorena B Parra-González; Gabriela A Aravena-Abarzúa; Cristell S Navarro-Navarro; Joshua Udall; Jeff Maughan; Louis M Peterson; Haroldo E Salvo-Garrido; Iván J Maureira-Butler
Journal:  BMC Genomics       Date:  2012-08-24       Impact factor: 3.969

10.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Authors:  Chang Liu; Linchun Shi; Yingjie Zhu; Haimei Chen; Jianhui Zhang; Xiaohan Lin; Xiaojun Guan
Journal:  BMC Genomics       Date:  2012-12-20       Impact factor: 3.969
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