Literature DB >> 1935423

Involvement of water in host-guest interactions.

R U Lemieux1, L T Delbaere, H Beierbeck, U Spohr.   

Abstract

As predicted by inhibition studies the X-ray crystal structure of the complex formed between the tetrasaccharide alpha-L-Fuc(1----2)-beta-D-Gal(1----3) [alpha-L-Fuc-(1----4)]-beta-D-GlcNAc- OMe (Leb-OMe) and the lectin IV of Griffonia simplicifolia (GS-IV) shows three hydroxyl groups (referred to as the polar key) hydrogen bonded within the combining site and flanked by hydrophobic surfaces. Apart from OH-6 of the beta-D-GlcNAc unit, the six other hydroxyl groups reside at or near the periphery of the combining site. Linear enthalpy-entropy compensation is observed for complex formation with monodeoxy and other derivatives of Leb-OMe involving one of these six hydroxyl groups. Decreases in both the thermodynamic parameters (- delta H 0 and - delta S 0) are largest when a hydroxyl group is in contact with water at the periphery of the combining site. The experimental evidence indicates that the binding reactions involve very similar if not identical changes in the conformations of both the lectin and the ligands; it is therefore proposed that the enthalpy-entropy compensations arise because water molecules hydrogen bonded to the amphiphilic surfaces of the unbound oligosaccharide and the protein are more mobile (higher entropy content) and less strongly hydrogen bonded than are water molecules in bulk solution. Monte Carlo simulations of the hydration of Leb-OMe appear to support this idea. In accordance with this proposal the association of complementary amphiphilic molecular surfaces from aqueous solution is driven by the release of the water molecules from both non-polar and polar regions of the amphiphiles to form stronger hydrogen bonds in bulk water. In the case of highly amphiphilic molecules such as the oligosaccharide Leb-OMe the negative contributions to entropy change dominate positive contributions that may arise from hydrophobic effects. The GS-IV(Leb-OMe)2 complex is stabilized by the hydrogen-bonding networks involving an asparate, an asparagine and a serine residue within the combining site and the above-mentioned key hydroxyl groups. Improved packing of the molecules may also be involved.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 1935423     DOI: 10.1002/9780470514085.ch15

Source DB:  PubMed          Journal:  Ciba Found Symp        ISSN: 0300-5208


  12 in total

1.  How reverse turns may mediate the formation of helical segments in proteins: an x-ray model.

Authors:  A Perczel; B M Foxman; G D Fasman
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-01       Impact factor: 11.205

2.  Isothermal titration calorimetry reveals differential binding thermodynamics of variable region-identical antibodies differing in constant region for a univalent ligand.

Authors:  Tarun K Dam; Marcela Torres; C Fred Brewer; Arturo Casadevall
Journal:  J Biol Chem       Date:  2008-09-19       Impact factor: 5.157

3.  On the stability of nucleic acid structures in solution: enthalpy-entropy compensations, internal rotations and reversibility.

Authors:  M S Searle; D H Williams
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

Review 4.  Carbohydrate vaccines: developing sweet solutions to sticky situations?

Authors:  Rena D Astronomo; Dennis R Burton
Journal:  Nat Rev Drug Discov       Date:  2010-04       Impact factor: 84.694

5.  Structural basis for the interaction between human milk oligosaccharides and the bacterial lectin PA-IIL of Pseudomonas aeruginosa.

Authors:  Stéphanie Perret; Charles Sabin; Claire Dumon; Martina Pokorná; Catherine Gautier; Oxana Galanina; Shahov Ilia; Nicolai Bovin; Magali Nicaise; Michel Desmadril; Nechama Gilboa-Garber; Michaela Wimmerová; Edward P Mitchell; Anne Imberty
Journal:  Biochem J       Date:  2005-07-15       Impact factor: 3.857

6.  Effect of substituent on the thermodynamics of D-glucopyranoside binding to concanavalin A, pea (Pisum sativum) lectin and lentil (Lens culinaris) lectin.

Authors:  F P Schwarz; S Misquith; A Surolia
Journal:  Biochem J       Date:  1996-05-15       Impact factor: 3.857

7.  Thermodynamic parameters of the interaction of Urtica dioica agglutinin with N-acetylglucosamine and its oligomers.

Authors:  R T Lee; H J Gabius; Y C Lee
Journal:  Glycoconj J       Date:  1998-07       Impact factor: 2.916

8.  Energetics of 5-bromo-4-chloro-3-indolyl-alpha-D-mannose binding to the Parkia platycephala seed lectin and its use for MAD phasing.

Authors:  Francisca Gallego del Sol; Javier Gómez; Sylviane Hoos; Celso S Nagano; Benildo S Cavada; Patrick England; Juan J Calvete
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-02-24

Review 9.  Recent advances in employing molecular modelling to determine the specificity of glycan-binding proteins.

Authors:  Oliver C Grant; Robert J Woods
Journal:  Curr Opin Struct Biol       Date:  2014-08-07       Impact factor: 6.809

10.  Differential scanning calorimetry and X-ray diffraction studies of the thermotropic phase behavior of the diastereomeric di-tetradecyl-beta-D-galactosyl glycerols and their mixture.

Authors:  D A Mannock; R N McElhaney; P E Harper; S M Gruner
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.