Literature DB >> 19351535

A picture is worth a thousand words: genomics to phenomics in the yeast Saccharomyces cerevisiae.

Franco J Vizeacoumar1, Yolanda Chong, Charles Boone, Brenda J Andrews.   

Abstract

Large scale cell biological experiments are beginning to be applied as a systems-level approach to decipher mechanisms that govern cellular function in health and disease. The use of automated microscopes combined with digital imaging, machine learning and other analytical tools has enabled high-content screening (HCS) in a variety of experimental systems. Successful HCS screens demand careful attention to assay development, data acquisition methods and available genomic tools. In this minireview, we highlight developments in this field pertaining to yeast cell biology and discuss how we have combined HCS with methods for automated yeast genetics (synthetic genetic array (SGA) analysis) to enable systematic analysis of cell biological phenotypes in a variety of genetic backgrounds.

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Year:  2009        PMID: 19351535     DOI: 10.1016/j.febslet.2009.03.068

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

Review 1.  Colloquium papers: Numbering the hairs on our heads: the shared challenge and promise of phenomics.

Authors:  David Houle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-26       Impact factor: 11.205

2.  Interactions of subunit CCT3 in the yeast chaperonin CCT/TRiC with Q/N-rich proteins revealed by high-throughput microscopy analysis.

Authors:  Michal Nadler-Holly; Michal Breker; Ranit Gruber; Ariel Azia; Melissa Gymrek; Miriam Eisenstein; Keith R Willison; Maya Schuldiner; Amnon Horovitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

3.  Exploiting the determinants of stochastic gene expression in Saccharomyces cerevisiae for genome-wide prediction of expression noise.

Authors:  Jingjing Li; Renqiang Min; Franco J Vizeacoumar; Ke Jin; Xiaofeng Xin; Zhaolei Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-20       Impact factor: 11.205

4.  High-content, image-based screening for drug targets in yeast.

Authors:  Shinsuke Ohnuki; Satomi Oka; Satoru Nogami; Yoshikazu Ohya
Journal:  PLoS One       Date:  2010-04-14       Impact factor: 3.240

Review 5.  Functional genomics in the study of yeast cell polarity: moving in the right direction.

Authors:  Erin Styles; Ji-Young Youn; Mojca Mattiazzi Usaj; Brenda Andrews
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

6.  Variance in epistasis links gene regulation and evolutionary rate in the yeast genetic interaction network.

Authors:  Janna L Fierst; Patrick C Phillips
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

7.  Protein complexes are central in the yeast genetic landscape.

Authors:  Magali Michaut; Anastasia Baryshnikova; Michael Costanzo; Chad L Myers; Brenda J Andrews; Charles Boone; Gary D Bader
Journal:  PLoS Comput Biol       Date:  2011-02-24       Impact factor: 4.475

8.  PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae.

Authors:  Ke Jin; Jingjing Li; Frederick S Vizeacoumar; Zhijian Li; Renqiang Min; Lee Zamparo; Franco J Vizeacoumar; Alessandro Datti; Brenda Andrews; Charles Boone; Zhaolei Zhang
Journal:  Nucleic Acids Res       Date:  2011-10-18       Impact factor: 16.971

Review 9.  The emergence of lipid droplets in yeast: current status and experimental approaches.

Authors:  Maja Radulovic; Oskar Knittelfelder; Alvaro Cristobal-Sarramian; Dagmar Kolb; Heimo Wolinski; Sepp D Kohlwein
Journal:  Curr Genet       Date:  2013-09-21       Impact factor: 3.886

10.  Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis.

Authors:  Franco J Vizeacoumar; Nydia van Dyk; Frederick S Vizeacoumar; Vincent Cheung; Jingjing Li; Yaroslav Sydorskyy; Nicolle Case; Zhijian Li; Alessandro Datti; Corey Nislow; Brian Raught; Zhaolei Zhang; Brendan Frey; Kerry Bloom; Charles Boone; Brenda J Andrews
Journal:  J Cell Biol       Date:  2010-01-11       Impact factor: 10.539

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