Literature DB >> 19350745

Conformations of the sugar-phosphate backbone in helical DNA crystal structures.

B Schneider1, S Neidle, H M Berman.   

Abstract

The DNA backbone geometry was analyzed for 96 crystal structures of oligodeoxynucleotides. The ranges and mean values of the torsion angles for the observed subclasses of the A-, B-, and Z-DNA conformational types were determined by analyzing distributions of the torsion angles and scattergrams relating pairs of angles.

Entities:  

Mesh：

Substances：

Year:  1997        PMID： 19350745     DOI： 10.1002/(sici)1097-0282(199707)42:1<113::aid-bip10>3.0.co;2-o

Source DB:  PubMed          Journal:  Biopolymers        ISSN： 0006-3525            Impact factor:   2.505


  48 in total

1.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

2.  Exocyclic groups in the minor groove influence the backbone conformation of DNA.

Authors:  B Wellenzohn; W Flader; R H Winger; A Hallbrucker; E Mayer; K R Liedl
Journal:  Nucleic Acids Res       Date:  2001-12-15       Impact factor: 16.971

3.  Alpha/gamma transitions in the B-DNA backbone.

Authors:  Péter Várnai; Dragana Djuranovic; Richard Lavery; Brigitte Hartmann
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

4.  Local sequential minimization of double stranded B-DNA using Monte Carlo annealing.

Authors:  Konstantinos Sfyrakis; Astero Provata; David C Povey; Brendan J Howlin
Journal:  J Mol Model       Date:  2004-03-24       Impact factor: 1.810

5.  Evaluation of DNA Force Fields in Implicit Solvation.

Authors:  Thomas Gaillard; David A Case
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

6.  Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure.

Authors:  Qian Steven Xu; Richard J Roberts; Hwai-Chen Guo
Journal:  Protein Sci       Date:  2005-10       Impact factor: 6.725

7.  Crystal structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide bound to d(CGTACG)2: implications for structure-activity relationships of acridinecarboxamide topoisomerase poisons.

Authors:  Adrienne Adams; J Mitchell Guss; William A Denny; Laurence P G Wakelin
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

Review 8.  Molecular modeling of nucleic acid structure.

Authors:  T E Cheatham; B R Brooks; P A Kollman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-11

9.  Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion.

Authors:  Vladimir Sychrovsky; Silvie Foldynova-Trantirkova; Nada Spackova; Koen Robeyns; Luc Van Meervelt; Wulf Blankenfeldt; Zuzana Vokacova; Jiri Sponer; Lukas Trantirek
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

10.  Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs.

Authors:  Arvind Marathe; Deepti Karandur; Manju Bansal
Journal:  BMC Struct Biol       Date:  2009-04-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.