Literature DB >> 19347651

Genome sequencing approaches and successes.

Michael Imelfort1, Jacqueline Batley, Sean Grimmond, David Edwards.   

Abstract

Sequence data is crucial to our understanding of crop growth and development, as differences in DNA sequence are responsible for almost all of the heritable differences between crop varieties and ecotypes. The sequence of a genome is often referred to as the genetic blueprint, and is the foundation for all additional information from the genome to the phenome. The value of DNA sequence is leading to rapid improvements in sequencing technology, increasing throughput, and reducing costs, and technological advances are accelerating with the introduction of novel approaches that are replacing the traditional Sanger-based methods. As genome sequencing becomes cheaper, it will be applied to a greater number of species with increasingly large and complex genomes. This will increase our understanding of how differences in the sequence relate to phenotypic observations, heritable traits, speciation, and evolution. Our understanding of plants will be greatly enhanced by this flow of sequence information, with direct benefit for crop improvement.

Mesh:

Substances:

Year:  2009        PMID: 19347651     DOI: 10.1007/978-1-59745-427-8_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  8 in total

Review 1.  Accessing complex crop genomes with next-generation sequencing.

Authors:  David Edwards; Jacqueline Batley; Rod J Snowdon
Journal:  Theor Appl Genet       Date:  2012-09-05       Impact factor: 5.699

Review 2.  Application of large-scale sequencing to marker discovery in plants.

Authors:  Robert J Henry; Mark Edwards; Daniel L E Waters; S Gopala Krishnan; Peter Bundock; Timothy R Sexton; Ardashir K Masouleh; Catherine J Nock; Julie Pattemore
Journal:  J Biosci       Date:  2012-11       Impact factor: 1.826

Review 3.  Apprehending multicellularity: regulatory networks, genomics, and evolution.

Authors:  L Aravind; Vivek Anantharaman; Thiago M Venancio
Journal:  Birth Defects Res C Embryo Today       Date:  2009-06

4.  Targeted identification of genomic regions using TAGdb.

Authors:  Daniel J Marshall; Alice Hayward; Dominic Eales; Michael Imelfort; Jiri Stiller; Paul J Berkman; Terry Clark; Megan McKenzie; Kaitao Lai; Chris Duran; Jacqueline Batley; David Edwards
Journal:  Plant Methods       Date:  2010-08-20       Impact factor: 4.993

5.  Whole genome and exome sequencing of monozygotic twins with trisomy 21, discordant for a congenital heart defect and epilepsy.

Authors:  Pongsathorn Chaiyasap; Supasak Kulawonganunchai; Chalurmpon Srichomthong; Sissades Tongsima; Kanya Suphapeetiporn; Vorasuk Shotelersuk
Journal:  PLoS One       Date:  2014-06-20       Impact factor: 3.240

6.  Structural variations in plant genomes.

Authors:  Rachit K Saxena; David Edwards; Rajeev K Varshney
Journal:  Brief Funct Genomics       Date:  2014-06-06       Impact factor: 4.241

7.  Morphological and molecular characterization of freshwater prawn of genus Macrobrachium in the coastal area of Cameroon.

Authors:  Judith G Makombu; Francesca Stomeo; Pius M Oben; Eldridge Tilly; Opiyo O Stephen; Benedicta O Oben; Evans K Cheruiyot; Getinet Mekuriaw Tarekegn; Paul Zango; Atem E Egbe; Abigail Ndagyong; Eric Mialhe; Jules R Ngueguim; Fidalis D N Mujibi
Journal:  Ecol Evol       Date:  2019-12-08       Impact factor: 2.912

Review 8.  Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Authors:  Chittaranjan Kole; Mehanathan Muthamilarasan; Robert Henry; David Edwards; Rishu Sharma; Michael Abberton; Jacqueline Batley; Alison Bentley; Michael Blakeney; John Bryant; Hongwei Cai; Mehmet Cakir; Leland J Cseke; James Cockram; Antonio Costa de Oliveira; Ciro De Pace; Hannes Dempewolf; Shelby Ellison; Paul Gepts; Andy Greenland; Anthony Hall; Kiyosumi Hori; Stephen Hughes; Mike W Humphreys; Massimo Iorizzo; Abdelbagi M Ismail; Athole Marshall; Sean Mayes; Henry T Nguyen; Francis C Ogbonnaya; Rodomiro Ortiz; Andrew H Paterson; Philipp W Simon; Joe Tohme; Roberto Tuberosa; Babu Valliyodan; Rajeev K Varshney; Stan D Wullschleger; Masahiro Yano; Manoj Prasad
Journal:  Front Plant Sci       Date:  2015-08-11       Impact factor: 5.753

  8 in total

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