Literature DB >> 19346307

Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.

Irina A Kataeva1, Sung-Jae Yang, Phuongan Dam, Farris L Poole, Yanbin Yin, Fengfeng Zhou, Wen-chi Chou, Ying Xu, Lynne Goodwin, David R Sims, John C Detter, Loren J Hauser, Janet Westpheling, Michael W W Adams.   

Abstract

"Anaerocellum thermophilum" DSM 6725 is a strictly anaerobic bacterium that grows optimally at 75 degrees C. It uses a variety of polysaccharides, including crystalline cellulose and untreated plant biomass, and has potential utility in biomass conversion. Here we report its complete genome sequence of 2.97 Mb, which is contained within one chromosome and two plasmids (of 8.3 and 3.6 kb). The genome encodes a broad set of cellulolytic enzymes, transporters, and pathways for sugar utilization and compared to those of other saccharolytic, anaerobic thermophiles is most similar to that of Caldicellulosiruptor saccharolyticus DSM 8903.

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Year:  2009        PMID： 19346307      PMCID： PMC2681903          DOI： 10.1128/JB.00256-09

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  Extremely thermophilic microorganisms for biomass conversion: status and prospects.

Authors:  Sara E Blumer-Schuette; Irina Kataeva; Janet Westpheling; Michael Ww Adams; Robert M Kelly
Journal:  Curr Opin Biotechnol       Date:  2008-06-02       Impact factor: 9.740

2.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Authors:  K E Nelson; R A Clayton; S R Gill; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; W C Nelson; K A Ketchum; L McDonald; T R Utterback; J A Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; J Heidelberg; G G Sutton; R D Fleischmann; J A Eisen; O White; S L Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

6.  Properties and gene structure of a bifunctional cellulolytic enzyme (CelA) from the extreme thermophile 'Anaerocellum thermophilum' with separate glycosyl hydrolase family 9 and 48 catalytic domains.

Authors:  V Zverlov; S Mahr; K Riedel; K Bronnenmeier
Journal:  Microbiology (Reading)       Date:  1998-02       Impact factor: 2.777

7.  Cloning, sequencing, and sequence analysis of two novel plasmids from the thermophilic anaerobic bacterium Anaerocellum thermophilum.

Authors:  Anders Clausen; Marie Just Mikkelsen; Imke Schröder; Birgitte K Ahring
Journal:  Plasmid       Date:  2004-09       Impact factor: 3.466

8.  Phylogenetic analysis of anaerobic thermophilic bacteria: aid for their reclassification.

Authors:  F A Rainey; N L Ward; H W Morgan; R Toalster; E Stackebrandt
Journal:  J Bacteriol       Date:  1993-08       Impact factor: 3.490

9.  Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.

Authors:  Harmen J G van de Werken; Marcel R A Verhaart; Amy L VanFossen; Karin Willquist; Derrick L Lewis; Jason D Nichols; Heleen P Goorissen; Emmanuel F Mongodin; Karen E Nelson; Ed W J van Niel; Alfons J M Stams; Donald E Ward; Willem M de Vos; John van der Oost; Robert M Kelly; Servé W M Kengen
Journal:  Appl Environ Microbiol       Date:  2008-09-05       Impact factor: 4.792

10.  Operon prediction using both genome-specific and general genomic information.

Authors:  Phuongan Dam; Victor Olman; Kyle Harris; Zhengchang Su; Ying Xu
Journal:  Nucleic Acids Res       Date:  2006-12-14       Impact factor: 16.971
  10 in total
  38 in total

1.  Phylogenetic, microbiological, and glycoside hydrolase diversities within the extremely thermophilic, plant biomass-degrading genus Caldicellulosiruptor.

Authors:  Sara E Blumer-Schuette; Derrick L Lewis; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

2.  A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.

Authors:  Jingwei Jiang; Jun Li; Hoi Shan Kwan; Chun Hang Au; Patrick Tik Wan Law; Lei Li; Kai Man Kam; Julia Mei Lun Ling; Frederick C Leung
Journal:  BMC Res Notes       Date:  2012-01-31

3.  Use of label-free quantitative proteomics to distinguish the secreted cellulolytic systems of Caldicellulosiruptor bescii and Caldicellulosiruptor obsidiansis.

Authors:  Adriane Lochner; Richard J Giannone; Miguel Rodriguez; Manesh B Shah; Jonathan R Mielenz; Martin Keller; Garabed Antranikian; David E Graham; Robert L Hettich
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

4.  Efficient degradation of lignocellulosic plant biomass, without pretreatment, by the thermophilic anaerobe "Anaerocellum thermophilum" DSM 6725.

Authors:  Sung-Jae Yang; Irina Kataeva; Scott D Hamilton-Brehm; Nancy L Engle; Timothy J Tschaplinski; Crissa Doeppke; Mark Davis; Janet Westpheling; Michael W W Adams
Journal:  Appl Environ Microbiol       Date:  2009-05-22       Impact factor: 4.792

5.  Synthesis and characterization of chimeric proteins based on cellulase and xylanase from an insect gut bacterium.

Authors:  Nidhi Adlakha; Raman Rajagopal; Saravanan Kumar; Vanga Siva Reddy; Syed Shams Yazdani
Journal:  Appl Environ Microbiol       Date:  2011-06-03       Impact factor: 4.792

6.  Improved growth media and culture techniques for genetic analysis and assessment of biomass utilization by Caldicellulosiruptor bescii.

Authors:  Joel Farkas; Daehwan Chung; Minseok Cha; Jennifer Copeland; Philip Grayeski; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2012-11-13       Impact factor: 3.346

7.  Biochemical and mutational analyses of a multidomain cellulase/mannanase from Caldicellulosiruptor bescii.

Authors:  Xiaoyun Su; Roderick I Mackie; Isaac K O Cann
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

8.  Pseudomycoicidin, a Class II Lantibiotic from Bacillus pseudomycoides.

Authors:  Shradha Basi-Chipalu; Jasmin Dischinger; Michaele Josten; Christiane Szekat; Annegret Zweynert; Hans-Georg Sahl; Gabriele Bierbaum
Journal:  Appl Environ Microbiol       Date:  2015-03-13       Impact factor: 4.792

9.  Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization.

Authors:  Jeffrey V Zurawski; Jonathan M Conway; Laura L Lee; Hunter J Simpson; Javier A Izquierdo; Sara Blumer-Schuette; Intawat Nookaew; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2015-08-07       Impact factor: 4.792

10.  Detection of a novel active transposable element in Caldicellulosiruptor hydrothermalis and a new search for elements in this genus.

Authors:  Daehwan Chung; Joel Farkas; Janet Westpheling
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-10       Impact factor: 3.346
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