Literature DB >> 19344116

Effects of tyrosine mutations on the conformational and oxidative folding of ribonuclease a: a comparative study.

Robert F Gahl1, Lovy Pradeep, Corey R Siegel, Guoqiang Xu, Harold A Scheraga.   

Abstract

Ribonuclease A (RNase A) undergoes more rapid conformational folding with its disulfide bonds intact than during oxidative folding from its reduced form. In this study, the effects of the mutants Y92G, Y92A, and Y92L on both the conformational and oxidative folding pathways were examined to determine the role of native interactions in different types of conformational searches for the biologically active structure of a protein. These mutations did not affect the overall conformational folding pathway of RNase A. However, in the mutants Y92G and Y92A, a key structured disulfide-bonded species, des-[65-72], involved in the oxidative folding pathway of RNase A, was destabilized. These results demonstrate the importance of native interactions in the folding process, namely, protection of a native (40-95) disulfide bond by a nearby tyrosyl-prolyl stacking interaction, when disulfide bonds are allowed to undergo SH/S-S reshuffling.

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Year:  2009        PMID: 19344116      PMCID: PMC2677636          DOI: 10.1021/bi802362t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  23 in total

1.  Contribution of individual disulfide bonds to the oxidative folding of ribonuclease A.

Authors:  M Ruoppolo; F Vinci; T A Klink; R T Raines; G Marino
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

2.  A localized specific interaction alters the unfolding pathways of structural homologues.

Authors:  Guoqiang Xu; Mahesh Narayan; Igor Kurinov; Daniel R Ripoll; Ervin Welker; Mey Khalili; Steven E Ealick; Harold A Scheraga
Journal:  J Am Chem Soc       Date:  2006-02-01       Impact factor: 15.419

3.  A novel methodology for assignment of disulfide bond pairings in proteins.

Authors:  J Wu; J T Watson
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

4.  NMR structural analysis of an analog of an intermediate formed in the rate-determining step of one pathway in the oxidative folding of bovine pancreatic ribonuclease A: automated analysis of 1H, 13C, and 15N resonance assignments for wild-type and [C65S, C72S] mutant forms.

Authors:  S Shimotakahara; C B Rios; J H Laity; D E Zimmerman; H A Scheraga; G T Montelione
Journal:  Biochemistry       Date:  1997-06-10       Impact factor: 3.162

5.  Effect of mutation of proline 93 on redox unfolding/folding of bovine pancreatic ribonuclease A.

Authors:  A Cao; E Welker; H A Scheraga
Journal:  Biochemistry       Date:  2001-07-24       Impact factor: 3.162

6.  Impact of an easily reducible disulfide bond on the oxidative folding rate of multi-disulfide-containing proteins.

Authors:  H J Leung; G Xu; M Narayan; H A Scheraga
Journal:  J Pept Res       Date:  2005-01

7.  Regeneration of bovine pancreatic ribonuclease A: detailed kinetic analysis of two independent folding pathways.

Authors:  D M Rothwarf; Y J Li; H A Scheraga
Journal:  Biochemistry       Date:  1998-03-17       Impact factor: 3.162

8.  Regeneration of bovine pancreatic ribonuclease A: identification of two nativelike three-disulfide intermediates involved in separate pathways.

Authors:  D M Rothwarf; Y J Li; H A Scheraga
Journal:  Biochemistry       Date:  1998-03-17       Impact factor: 3.162

9.  A pulse-chase-competition experiment to determine if a folding intermediate is on or off-pathway: application to ribonuclease A.

Authors:  D V Laurents; M Bruix; M Jamin; R L Baldwin
Journal:  J Mol Biol       Date:  1998-10-30       Impact factor: 5.469

10.  Implementation of a k/k(0) method to identify long-range structure in transition states during conformational folding/unfolding of proteins.

Authors:  Lovy Pradeep; Igor Kurinov; Steven E Ealick; Harold A Scheraga
Journal:  Structure       Date:  2007-10       Impact factor: 5.006

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