Literature DB >> 19342786

Crystallization and preliminary X-ray analysis of carnein, a serine protease from Ipomoea carnea.

Ashok Kumar Patel1, Niels van Oosterwijk, Vijay Kumar Singh, Henriëtte J Rozeboom, Kor H Kalk, Roland J Siezen, Medicherla V Jagannadham, Bauke W Dijkstra.   

Abstract

Carnein is an 80 kDa subtilisin-like serine protease from the latex of the plant Ipomoea carnea which displays an exceptional resistance to chemical and thermal denaturation. In order to obtain the first crystal structure of a plant subtilisin and to gain insight into the structural determinants underlying its remarkable stability, carnein was isolated from I. carnea latex, purified and crystallized by the hanging-drop vapour-diffusion method. A data set was collected to 2.0 A resolution in-house from a single crystal at 110 K. The crystals belonged to the trigonal space group P3(1)21 or P3(2)21, with unit-cell parameters a = b = 126.9, c = 84.6 A, alpha = beta = 90, gamma = 120 degrees. Assuming the presence of one molecule per asymmetric unit, the Matthews coefficient is 2.46 A(3) Da(-1), corresponding to a solvent content of 50%. Structure determination of the enzyme is in progress.

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Year:  2009        PMID: 19342786      PMCID: PMC2664766          DOI: 10.1107/S1744309109008288

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature.

Authors:  Z Adam; I Adamska; K Nakabayashi; O Ostersetzer; K Haussuhl; A Manuell; B Zheng; O Vallon; S R Rodermel; K Shinozaki; A K Clarke
Journal:  Plant Physiol       Date:  2001-04       Impact factor: 8.340

2.  Dipeptidyl-peptidase II is related to lysosomal Pro-X carboxypeptidase.

Authors:  N D Rawlings; A J Barrett
Journal:  Biochim Biophys Acta       Date:  1996-11-14

Review 3.  Subtilases: the superfamily of subtilisin-like serine proteases.

Authors:  R J Siezen; J A Leunissen
Journal:  Protein Sci       Date:  1997-03       Impact factor: 6.725

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Characterization of the subtilase gene family in tomato (Lycopersicon esculentum Mill.).

Authors:  J Meichtry; N Amrhein; A Schaller
Journal:  Plant Mol Biol       Date:  1999-03       Impact factor: 4.076

Review 6.  Families and clans of serine peptidases.

Authors:  A J Barrett; N D Rawlings
Journal:  Arch Biochem Biophys       Date:  1995-04-20       Impact factor: 4.013

7.  Carnein, a serine protease from noxious plant weed Ipomoea carnea (morning glory).

Authors:  Ashok Kumar Patel; Vijay Kumar Singh; Medicherla V Jagannadham
Journal:  J Agric Food Chem       Date:  2007-06-16       Impact factor: 5.279

8.  The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis.

Authors:  Eric P Beers; Alan M Jones; Allan W Dickerman
Journal:  Phytochemistry       Date:  2004-01       Impact factor: 4.072

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  MEROPS: the peptidase database.

Authors:  Neil D Rawlings; Fraser R Morton; Alan J Barrett
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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