Literature DB >> 19341254

Amyloid beta-protein: experiment and theory on the 21-30 fragment.

Megan M Murray1, Mary Griffin Krone, Summer L Bernstein, Andrij Baumketner, Margaret M Condron, Noel D Lazo, David B Teplow, Thomas Wyttenbach, Joan-Emma Shea, Michael T Bowers.   

Abstract

The structure of the 21-30 fragment of the amyloid beta-protein (Abeta) was investigated by ion mobility mass spectrometry and replica exchange dynamics simulations. Mutations associated with familial Alzheimer's disease (E22G, E22Q, E22K, and D23N) of Abeta(21-30) were also studied, in order to understand any structural changes that might occur with these substitutions. The structure of the WT peptide shows a bend and a perpendicular turn in the backbone which is maintained by a network of D23 hydrogen bonding. Results for the mutants show that substitutions at E22 do little to alter the overall structure of the fragment. A substitution at D23 resulted in a change of structure for Abeta(21-30). A comparison of these gas-phase studies to previous solution-phase studies reveals that the peptide can fold in the absence of solvent to a structure also seen in solution, highlighting the important role of the D23 hydrogen bonding network in stabilizing the fragment's folded structure.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19341254      PMCID: PMC2693341          DOI: 10.1021/jp808384x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  16 in total

1.  Exploring the helix-coil transition via all-atom equilibrium ensemble simulations.

Authors:  Eric J Sorin; Vijay S Pande
Journal:  Biophys J       Date:  2005-01-21       Impact factor: 4.033

Review 2.  Alzheimer's disease: the amyloid cascade hypothesis.

Authors:  J A Hardy; G A Higgins
Journal:  Science       Date:  1992-04-10       Impact factor: 47.728

3.  On the nucleation of amyloid beta-protein monomer folding.

Authors:  Noel D Lazo; Marianne A Grant; Margaret C Condron; Alan C Rigby; David B Teplow
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

4.  Amyloid beta-protein monomer structure: a computational and experimental study.

Authors:  Andrij Baumketner; Summer L Bernstein; Thomas Wyttenbach; Gal Bitan; David B Teplow; Michael T Bowers; Joan-Emma Shea
Journal:  Protein Sci       Date:  2006-03       Impact factor: 6.725

5.  Amyloid beta-protein: monomer structure and early aggregation states of Abeta42 and its Pro19 alloform.

Authors:  Summer L Bernstein; Thomas Wyttenbach; Andrij Baumketner; Joan-Emma Shea; Gal Bitan; David B Teplow; Michael T Bowers
Journal:  J Am Chem Soc       Date:  2005-02-23       Impact factor: 15.419

6.  Mutation of the Alzheimer's disease amyloid gene in hereditary cerebral hemorrhage, Dutch type.

Authors:  E Levy; M D Carman; I J Fernandez-Madrid; M D Power; I Lieberburg; S G van Duinen; G T Bots; W Luyendijk; B Frangione
Journal:  Science       Date:  1990-06-01       Impact factor: 47.728

7.  On the nucleation and growth of amyloid beta-protein fibrils: detection of nuclei and quantitation of rate constants.

Authors:  A Lomakin; D S Chung; G B Benedek; D A Kirschner; D B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-06       Impact factor: 11.205

8.  Familial Alzheimer's disease mutations alter the stability of the amyloid beta-protein monomer folding nucleus.

Authors:  Marianne A Grant; Noel D Lazo; Aleksey Lomakin; Margaret M Condron; Hiromi Arai; Ghiam Yamin; Alan C Rigby; David B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-10       Impact factor: 11.205

9.  Presenile dementia and cerebral haemorrhage linked to a mutation at codon 692 of the beta-amyloid precursor protein gene.

Authors:  L Hendriks; C M van Duijn; P Cras; M Cruts; W Van Hul; F van Harskamp; A Warren; M G McInnis; S E Antonarakis; J J Martin
Journal:  Nat Genet       Date:  1992-06       Impact factor: 38.330

10.  Linkage and mutational analysis of familial Alzheimer disease kindreds for the APP gene region.

Authors:  K Kamino; H T Orr; H Payami; E M Wijsman; M E Alonso; S M Pulst; L Anderson; S O'dahl; E Nemens; J A White
Journal:  Am J Hum Genet       Date:  1992-11       Impact factor: 11.025

View more
  15 in total

Review 1.  Biochemistry of amyloid β-protein and amyloid deposits in Alzheimer disease.

Authors:  Colin L Masters; Dennis J Selkoe
Journal:  Cold Spring Harb Perspect Med       Date:  2012-06       Impact factor: 6.915

2.  Structures of beta-amyloid peptide 1-40, 1-42, and 1-55-the 672-726 fragment of APP-in a membrane environment with implications for interactions with gamma-secretase.

Authors:  Naoyuki Miyashita; John E Straub; D Thirumalai
Journal:  J Am Chem Soc       Date:  2009-12-16       Impact factor: 15.419

Review 3.  Disrupting self-assembly and toxicity of amyloidogenic protein oligomers by "molecular tweezers" - from the test tube to animal models.

Authors:  Aida Attar; Gal Bitan
Journal:  Curr Pharm Des       Date:  2014       Impact factor: 3.116

Review 4.  Ion Mobility Collision Cross Section Compendium.

Authors:  Jody C May; Caleb B Morris; John A McLean
Journal:  Anal Chem       Date:  2016-12-28       Impact factor: 6.986

5.  Alzheimer's protective A2T mutation changes the conformational landscape of the Aβ₁₋₄₂ monomer differently than does the A2V mutation.

Authors:  Payel Das; Brian Murray; Georges Belfort
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

6.  The structure of Abeta42 C-terminal fragments probed by a combined experimental and theoretical study.

Authors:  Chun Wu; Megan M Murray; Summer L Bernstein; Margaret M Condron; Gal Bitan; Joan-Emma Shea; Michael T Bowers
Journal:  J Mol Biol       Date:  2009-01-23       Impact factor: 5.469

Review 7.  Molecular mechanisms of disease-causing missense mutations.

Authors:  Shannon Stefl; Hafumi Nishi; Marharyta Petukh; Anna R Panchenko; Emil Alexov
Journal:  J Mol Biol       Date:  2013-07-16       Impact factor: 5.469

8.  A model of amyloid's role in disease based on fibril fracture.

Authors:  Damien Hall; Herman Edskes
Journal:  Biophys Chem       Date:  2009-08-18       Impact factor: 2.352

9.  β-amyloid model core peptides: Effects of hydrophobes and disulfides.

Authors:  Laura M L Hawk; Jay M Pittman; Patrick C Moore; Atul K Srivastava; Jonathan Zerweck; Joshua T B Williams; Andrew J Hawk; Joseph R Sachleben; Stephen C Meredith
Journal:  Protein Sci       Date:  2019-11-25       Impact factor: 6.725

10.  Dynamics of metastable β-hairpin structures in the folding nucleus of amyloid β-protein.

Authors:  L Cruz; J Srinivasa Rao; D B Teplow; B Urbanc
Journal:  J Phys Chem B       Date:  2012-05-24       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.