Literature DB >> 19336836

Why we need quantitative dynamic models.

Ravi Iyengar.   

Abstract

Systems biology is changing the way we think about regulatory phenomena: Instead of focusing on individual components and single reactions as rate-limiting steps, we are now considering systems as a whole to understand how regulation arises from multiple interacting components. To understand the mechanisms by which interacting components become regulatory systems, we need to have a quantitative understanding of the system. At the cellular level, this means knowing the concentrations of cellular components, such as proteins, and the reaction rates for interactions between components. Mechanistic understanding of regulatory behavior will be helpful in developing predictive models of relationships between complex genotypes and variable phenotypes.

Mesh:

Year:  2009        PMID: 19336836     DOI: 10.1126/scisignal.264eg3

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  9 in total

1.  Data-driven modelling of receptor tyrosine kinase signalling networks quantifies receptor-specific potencies of PI3K- and Ras-dependent ERK activation.

Authors:  Murat Cirit; Jason M Haugh
Journal:  Biochem J       Date:  2012-01-01       Impact factor: 3.857

2.  Quantitative models of signal transduction networks: How detailed should they be?

Authors:  Murat Cirit; Jason M Haugh
Journal:  Commun Integr Biol       Date:  2011-05

Review 3.  Systems approaches to polypharmacology and drug discovery.

Authors:  Aislyn D W Boran; Ravi Iyengar
Journal:  Curr Opin Drug Discov Devel       Date:  2010-05

Review 4.  Cancer stem cells: a systems biology view of their role in prognosis and therapy.

Authors:  Susan D Mertins
Journal:  Anticancer Drugs       Date:  2014-04       Impact factor: 2.248

5.  Systems pharmacology.

Authors:  Aislyn D W Boran; Ravi Iyengar
Journal:  Mt Sinai J Med       Date:  2010 Jul-Aug

6.  Systematic quantification of negative feedback mechanisms in the extracellular signal-regulated kinase (ERK) signaling network.

Authors:  Murat Cirit; Chun-Chao Wang; Jason M Haugh
Journal:  J Biol Chem       Date:  2010-09-16       Impact factor: 5.157

7.  Systems analysis of small signaling modules relevant to eight human diseases.

Authors:  Kelly F Benedict; Feilim Mac Gabhann; Robert K Amanfu; Arvind K Chavali; Erwin P Gianchandani; Lydia S Glaw; Matthew A Oberhardt; Bryan C Thorne; Jason H Yang; Jason A Papin; Shayn M Peirce; Jeffrey J Saucerman; Thomas C Skalak
Journal:  Ann Biomed Eng       Date:  2010-12-04       Impact factor: 3.934

8.  CANA: A Python Package for Quantifying Control and Canalization in Boolean Networks.

Authors:  Rion B Correia; Alexander J Gates; Xuan Wang; Luis M Rocha
Journal:  Front Physiol       Date:  2018-08-14       Impact factor: 4.566

9.  Quantifying the optimal strategy of population control of quorum sensing network in Escherichia coli.

Authors:  Xiang Li; Jun Jin; Xiaocui Zhang; Fei Xu; Jinjin Zhong; Zhiyong Yin; Hong Qi; Zhaoshou Wang; Jianwei Shuai
Journal:  NPJ Syst Biol Appl       Date:  2021-09-02
  9 in total

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