Literature DB >> 19333554

'Putting our heads together': insights into genomic conservation between human and canine intracranial tumors.

Rachael Thomas1, Shannon E Duke, Huixia J Wang, Tessa E Breen, Robert J Higgins, Keith E Linder, Peter Ellis, Cordelia F Langford, Peter J Dickinson, Natasha J Olby, Matthew Breen.   

Abstract

Numerous attributes render the domestic dog a highly pertinent model for cancer-associated gene discovery. We performed microarray-based comparative genomic hybridization analysis of 60 spontaneous canine intracranial tumors to examine the degree to which dog and human patients exhibit aberrations of ancestrally related chromosome regions, consistent with a shared pathogenesis. Canine gliomas and meningiomas both demonstrated chromosome copy number aberrations (CNAs) that share evolutionarily conserved synteny with those previously reported in their human counterpart. Interestingly, however, genomic imbalances orthologous to some of the hallmark aberrations of human intracranial tumors, including chromosome 22/NF2 deletions in meningiomas and chromosome 1p/19q deletions in oligodendrogliomas, were not major events in the dog. Furthermore, and perhaps most significantly, we identified highly recurrent CNAs in canine intracranial tumors for which the human orthologue has been reported previously at low frequency but which have not, thus far, been associated intimately with the pathogenesis of the tumor. The presence of orthologous CNAs in canine and human intracranial cancers is strongly suggestive of their biological significance in tumor development and/or progression. Moreover, the limited genetic heterogenity within purebred dog populations, coupled with the contrasting organization of the dog and human karyotypes, offers tremendous opportunities for refining evolutionarily conserved regions of tumor-associated genomic imbalance that may harbor novel candidate genes involved in their pathogenesis. A comparative approach to the study of canine and human intracranial tumors may therefore provide new insights into their genetic etiology, towards development of more sophisticated molecular subclassification and tailored therapies in both species.

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Year:  2009        PMID: 19333554      PMCID: PMC3225023          DOI: 10.1007/s11060-009-9877-5

Source DB:  PubMed          Journal:  J Neurooncol        ISSN: 0167-594X            Impact factor:   4.130


  59 in total

1.  Alterations of chromosome arms 1p and 19q as predictors of survival in oligodendrogliomas, astrocytomas, and mixed oligoastrocytomas.

Authors:  J S Smith; A Perry; T J Borell; H K Lee; J O'Fallon; S M Hosek; D Kimmel; A Yates; P C Burger; B W Scheithauer; R B Jenkins
Journal:  J Clin Oncol       Date:  2000-02       Impact factor: 44.544

2.  Breakpoint identification and smoothing of array comparative genomic hybridization data.

Authors:  Kees Jong; Elena Marchiori; Gerrit Meijer; A V D Vaart; Bauke Ylstra
Journal:  Bioinformatics       Date:  2004-06-16       Impact factor: 6.937

Review 3.  Brain tumours: classification and genes.

Authors:  V P Collins
Journal:  J Neurol Neurosurg Psychiatry       Date:  2004-06       Impact factor: 10.154

Review 4.  Neuro-oncology: new insights and advances in treatment.

Authors:  Riccardo Soffietti; Roberta Rudà
Journal:  Lancet Neurol       Date:  2008-01       Impact factor: 44.182

5.  Canine intracranial primary neoplasia: 173 cases (1986-2003).

Authors:  Jessica M Snyder; Frances S Shofer; Thomas J Van Winkle; Christiane Massicotte
Journal:  J Vet Intern Med       Date:  2006 May-Jun       Impact factor: 3.333

Review 6.  The WHO classification of tumors of the nervous system.

Authors:  Paul Kleihues; David N Louis; Bernd W Scheithauer; Lucy B Rorke; Guido Reifenberger; Peter C Burger; Webster K Cavenee
Journal:  J Neuropathol Exp Neurol       Date:  2002-03       Impact factor: 3.685

7.  Comparative genomic hybridization analysis of genomic alterations in benign, atypical and anaplastic meningiomas.

Authors:  Ali Arslantas; Sevilhan Artan; Ulkü Oner; Ramazan Durmaz; Hamza Müslümanoğlu; Metin Ant Atasoy; Nurettin Başaran; Eşref Tel
Journal:  Acta Neurol Belg       Date:  2002-06       Impact factor: 2.396

8.  Genetic structure of the purebred domestic dog.

Authors:  Heidi G Parker; Lisa V Kim; Nathan B Sutter; Scott Carlson; Travis D Lorentzen; Tiffany B Malek; Gary S Johnson; Hawkins B DeFrance; Elaine A Ostrander; Leonid Kruglyak
Journal:  Science       Date:  2004-05-21       Impact factor: 47.728

9.  Chromosome aberrations in canine multicentric lymphomas detected with comparative genomic hybridisation and a panel of single locus probes.

Authors:  R Thomas; K C Smith; E A Ostrander; F Galibert; M Breen
Journal:  Br J Cancer       Date:  2003-10-20       Impact factor: 7.640

10.  Genetic and epigenetic changes in the common 1p36 deletion in neuroblastoma tumours.

Authors:  H Carén; S Fransson; K Ejeskär; P Kogner; T Martinsson
Journal:  Br J Cancer       Date:  2007-10-16       Impact factor: 7.640

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  34 in total

1.  Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas.

Authors:  Rachael Thomas; Eric L Seiser; Alison Motsinger-Reif; Luke Borst; Victor E Valli; Kathryn Kelley; Steven E Suter; David Argyle; Kristine Burgess; Jerold Bell; Kerstin Lindblad-Toh; Jaime F Modiano; Matthew Breen
Journal:  Leuk Lymphoma       Date:  2011-03-07

2.  Genome-wide assessment of recurrent genomic imbalances in canine leukemia identifies evolutionarily conserved regions for subtype differentiation.

Authors:  Sarah C Roode; Daniel Rotroff; Anne C Avery; Steven E Suter; Dorothee Bienzle; Joshua D Schiffman; Alison Motsinger-Reif; Matthew Breen
Journal:  Chromosome Res       Date:  2015-06-03       Impact factor: 5.239

3.  A Revised Diagnostic Classification of Canine Glioma: Towards Validation of the Canine Glioma Patient as a Naturally Occurring Preclinical Model for Human Glioma.

Authors:  Jennifer W Koehler; Andrew D Miller; C Ryan Miller; Brian Porter; Kenneth Aldape; Jessica Beck; Daniel Brat; Ingrid Cornax; Kara Corps; Chad Frank; Caterina Giannini; Craig Horbinski; Jason T Huse; M Gerard O'Sullivan; Daniel R Rissi; R Mark Simpson; Kevin Woolard; Joanna H Shih; Christina Mazcko; Mark R Gilbert; Amy K LeBlanc
Journal:  J Neuropathol Exp Neurol       Date:  2018-11-01       Impact factor: 3.685

4.  Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes.

Authors:  Shannon E Duke Becker; Rachael Thomas; Vladimir A Trifonov; Robert K Wayne; Alexander S Graphodatsky; Matthew Breen
Journal:  Chromosome Res       Date:  2011-09-27       Impact factor: 5.239

5.  Canine spontaneous glioma: a translational model system for convection-enhanced delivery.

Authors:  Peter J Dickinson; Richard A LeCouteur; Robert J Higgins; John R Bringas; Richard F Larson; Yoji Yamashita; Michal T Krauze; John Forsayeth; Charles O Noble; Daryl C Drummond; Dmitri B Kirpotin; John W Park; Mitchel S Berger; Krystof S Bankiewicz
Journal:  Neuro Oncol       Date:  2010-05-20       Impact factor: 12.300

Review 6.  Victory and defeat in the induction of a therapeutic response through vaccine therapy for human and canine brain tumors: a review of the state of the art.

Authors:  Michael R Olin; G Elizabeth Pluhar; Brian M Andersen; Rob Shaver; Nate N Waldron; Christopher L Moertel
Journal:  Crit Rev Immunol       Date:  2014       Impact factor: 2.214

Review 7.  Creation of an NCI comparative brain tumor consortium: informing the translation of new knowledge from canine to human brain tumor patients.

Authors:  Amy K LeBlanc; Christina Mazcko; Diane E Brown; Jennifer W Koehler; Andrew D Miller; C Ryan Miller; R Timothy Bentley; Rebecca A Packer; Matthew Breen; C Elizabeth Boudreau; Jonathan M Levine; R Mark Simpson; Charles Halsey; William Kisseberth; John H Rossmeisl; Peter J Dickinson; Timothy M Fan; Kara Corps; Kenneth Aldape; Vinay Puduvalli; G Elizabeth Pluhar; Mark R Gilbert
Journal:  Neuro Oncol       Date:  2016-05-14       Impact factor: 12.300

Review 8.  Invited review--neuroimaging response assessment criteria for brain tumors in veterinary patients.

Authors:  John H Rossmeisl; Paulo A Garcia; Gregory B Daniel; John Daniel Bourland; Waldemar Debinski; Nikolaos Dervisis; Shawna Klahn
Journal:  Vet Radiol Ultrasound       Date:  2013-11-13       Impact factor: 1.363

9.  Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas.

Authors:  Rachael Thomas; Victor E Valli; Peter Ellis; Jerold Bell; Elinor K Karlsson; John Cullen; Kerstin Lindblad-Toh; Cordelia F Langford; Matthew Breen
Journal:  Chromosome Res       Date:  2009-11-26       Impact factor: 5.239

10.  IDH1 and IDH2 hotspot mutations are not found in canine glioma.

Authors:  Zachary J Reitman; Natasha J Olby; Christopher L Mariani; Rachael Thomas; Matthew Breen; Darell D Bigner; Roger E McLendon; Hai Yan
Journal:  Int J Cancer       Date:  2010-07-01       Impact factor: 7.396

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