Literature DB >> 19332115

Novel genetic markers derived from the DNA fragments of Sox genes.

Lin Chen1, Wei Li, Shaojun Liu, Min Tao, Yu Long, Wei Duan, Chun Zhang, Jun Xiao, Qinbo Qin, Kaikun Luo, Jifang Liu, Yun Liu.   

Abstract

With the pair of degenerate primers designed against the conserved regions of HMG-box of Sox gene family, DNA fragments of different sizes were obtained by amplifying the whole genome DNA samples of many animals, including natural fish, artificial hybrid fish, Aves, reptiles, amphibians and hexapods. Each sample was identified by the specific DNA-band pattern formed by the DNA fragments with defined number and size which marked the sample's genetic characteristics. In addition, 50 DNA fragments from 22 kinds of animals were sequenced and comparatively analyzed so as to study their genetic relationships, especially that between artificial hybrids and their original parents. Based on the specific DNA-band pattern and the specific DNA sequence obtained in tissue DNA sample, we established the novel genetic DNA markers derived from the DNA fragments of Sox genes. The present results proved that the novel DNA markers provided fast and accurate markers for different animal phylogenetic branches and that these convenient markers can also distinguish closely related species and hybrids using a single gene family tool.

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Year:  2009        PMID: 19332115     DOI: 10.1016/j.mcp.2009.03.001

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  9 in total

1.  Evidence for the formation of the male gynogenetic fish.

Authors:  Shaojun Liu; Qinbo Qin; Yuequn Wang; Hong Zhang; Rurong Zhao; Chun Zhang; Jing Wang; Wei Li; Lin Chen; Jun Xiao; Kaikun Luo; Min Tao; Wei Duan; Yun Liu
Journal:  Mar Biotechnol (NY)       Date:  2009-07-15       Impact factor: 3.619

2.  Coexistence of diploid, triploid and tetraploid crucian carp (Carassius auratus) in natural waters.

Authors:  Jun Xiao; Tuomi Zou; Yubao Chen; Lin Chen; Shaojun Liu; Min Tao; Chun Zhang; Rurong Zhao; Yi Zhou; Yu Long; Cuiping You; Jinpeng Yan; Yun Liu
Journal:  BMC Genet       Date:  2011-01-29       Impact factor: 2.797

3.  Organization and variation analysis of 5S rDNA in different ploidy-level hybrids of red crucian carp × topmouth culter.

Authors:  Weiguo He; Qinbo Qin; Shaojun Liu; Tangluo Li; Jing Wang; Jun Xiao; Lihua Xie; Chun Zhang; Yun Liu
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

4.  A new type of homodiploid fish derived from the interspecific hybridization of female common carp × male blunt snout bream.

Authors:  Shi Wang; Xiaolan Ye; Yude Wang; Yuting Chen; Bowen Lin; Zhenfeng Yi; Zhuangwen Mao; Fangzhou Hu; Rurong Zhao; Juan Wang; Rong Zhou; Li Ren; Zhanzhou Yao; Min Tao; Chun Zhang; Jun Xiao; Qinbo Qin; Shaojun Liu
Journal:  Sci Rep       Date:  2017-06-23       Impact factor: 4.379

5.  Rapid genomic changes in allopolyploids of Carassius auratus red var. (♀) × Megalobrama amblycephala (♂).

Authors:  Qinbo Qin; Zhengfa Lai; Liu Cao; Qiong Xiao; YuDe Wang; Shaojun Liu
Journal:  Sci Rep       Date:  2016-10-05       Impact factor: 4.379

6.  Diploid hybrid fish derived from the cross between female Bleeker's yellow tail and male topmouth culter, two cyprinid fishes belonging to different subfamilies.

Authors:  Shengnan Li; Lihua Xie; Jun Xiao; Liujiao Yuan; Tian Zhou; Kaikun Luo; Chun Zhang; Rurong Zhao; Min Tao; Shaojun Liu
Journal:  BMC Genet       Date:  2019-10-23       Impact factor: 2.797

7.  DNA methylation analysis of allotetraploid hybrids of red crucian carp (Carassius auratus red var.) and common carp (Cyprinus carpio L.).

Authors:  Jun Xiao; Can Song; Shaojun Liu; Min Tao; Jie Hu; Jun Wang; Wei Liu; Ming Zeng; Yun Liu
Journal:  PLoS One       Date:  2013-02-15       Impact factor: 3.240

8.  The chromosomal constitution of fish hybrid lineage revealed by 5S rDNA FISH.

Authors:  Chun Zhang; Lihai Ye; Yiyi Chen; Jun Xiao; Yanhong Wu; Min Tao; Yamei Xiao; Shaojun Liu
Journal:  BMC Genet       Date:  2015-12-03       Impact factor: 2.797

9.  Hox genes reveal genomic DNA variation in tetraploid hybrids derived from Carassius auratus red var. (female) × Megalobrama amblycephala (male).

Authors:  Y D Wang; Q B Qin; R Yang; W Z Sun; Q W Liu; Y Y Huo; X Huang; M Tao; C Zhang; T Li; S J Liu
Journal:  BMC Genet       Date:  2017-10-11       Impact factor: 2.797

  9 in total

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