| Literature DB >> 19331747 |
Nobuhiro Takada, Hiromi Fujita, Hiroki Kawabata, Shuji Ando, Akiko Sakata, Ai Takano, Udom Chaithong.
Abstract
Entities:
Mesh:
Year: 2009 PMID: 19331747 PMCID: PMC2671449 DOI: 10.3201/eid1504.071271
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
FigurePhylogenetic analysis based on ompA gene (A) and rickettsial genus–specific 17-kDa antigen gene (B). Sequences were aligned by using the ClustalW software package (http://clustalw.ddbj.nig.ac.jp/top-j.html), and neighbor-joining phylogenetic tree construction and bootstrap analysis were conducted according to the Kimura 2-parameter method (www.ddbj.nig.ac.jp). Pairwise alignments were performed with an open-gap penalty of 10, a gap extension penalty of 0.5, and a gap distance of 8. Multiple alignments were also performed with the same values, and the phylogenetic branches were supported by bootstrap analysis with 1,000 replications (>800 were indicated). Rickettsia felis (CP000053) and R. canadensis (CP000409) were used as outgroups for ompA and 17-kDa antigen gene, respectively. The phylogenetic tree was constructed by using TreeView software version 1.5 (http://taxonomy.zoology.gla.ac.uk/rod/treeview.html). Scale bars indicate nucleotide substitutions (%) per site.