| Literature DB >> 19331740 |
Eric M Leroy1, Dieudoné Nkoghe, Benjamin Ollomo, Chimène Nze-Nkogue, Pierre Becquart, Gilda Grard, Xavier Pourrut, Rémi Charrel, Grégory Moureau, Angélique Ndjoyi-Mbiguino, Xavier De-Lamballerie.
Abstract
An outbreak of febrile illness occurred in Gabon in 2007, with 20,000 suspected cases. Chikungunya or dengue-2 virus infections were identified in 321 patients; 8 patients had documented co-infections. Aedes albopictus was identified as the principal vector for the transmission of both viruses.Entities:
Mesh:
Year: 2009 PMID: 19331740 PMCID: PMC2671412 DOI: 10.3201/eid1504.080664
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Chikungunya and dengue outbreaks in Gabon, 2007. Distribution of the outbreak and location of the 7 towns where suspected cases have been laboratory confirmed by using quantitative reverse transcription–PCR assay are shown. Chikungunya cases are represented by red circles, dengue cases by blue circles, and cases negative for the viruses by green circles. Testing methods are described in the footnote to the Table.
Positive test results for CHIKV and DENV-2 among febrile patients, by town, Gabon, 2007*†
| Towns | No. patients tested | No. CHIKV+ | No. DENV-2+ | No. CHIKV+/DENV-2+ |
|---|---|---|---|---|
| Libreville | 686 | 249 | 45 | 6 |
| Ntoum | 3 | 1 | 0 | 0 |
| Kango | 7 | 3 | 0 | 0 |
| Mitzic | 6 | 4 | 0 | 0 |
| Oyem | 45 | 15 | 2 | 1 |
| Minvoul | 7 | 3 | 1 | 1 |
| Cocobeach | 19 | 0 | 6 | 0 |
| Total | 773 | 275 | 54 | 8 |
*CHIKV, chikungunya virus; DENV-2, dengue-2 virus; +, positive. †RNA was extracted from 50 µL of plasma by using the ABI Prism 6100 Nucleic Acid PrepStation according to the manufacturer’s recommended procedures (Applied Biosystems, Foster City, CA, USA). Fifty-microliter aliquots of extracted RNA were then used in 100-µL High Capacity cDNA synthesis reactions according to the manufacturer’s instructions (Applied Biosystems). Finally, 10 µL of each cDNA reaction was then used as template for 50-µL quantitative PCRs that contained 200 nmol/L of probe and 900 nmol/L of each primer. The quantitative PCRs were then thermo-cycled in a 7500 Real-Time PCR system (Applied Biosystems) according to manufacturer’s recommended procedures. The probe used for the CHIKV, DENV, and DENV-2 assays were FAM-labeled with TAMRA quencher (Applied Biosystems).
Figure 2Phylogenetic relationships among dengue-2 virus (DENV-2) isolates based on full-length sequences (10,695 nt). A total of 85 DENV-2 genomes were compared with the human isolate obtained during the Gabon outbreak. Phylogeny was inferred by using neighbor-joining analysis. A neighbor-joining tree was constructed by using MEGA version 3.2 (www.megasoftware.net) with the Kimura 2-parameter corrections of multiple substitutions. Reliability of nodes was assessed by bootstrap resampling with 1,000 replicates. Branches are scaled according the number of substitutions per site, and the branch leading to the Thailand 94 strain was shortened for convenience. Bootstrap values are shown for major key nodes.