Literature DB >> 19330299

3D J-resolved NMR spectroscopy for unstructured polypeptides: fast measurement of 3J HNH alpha coupling constants with outstanding spectral resolution.

Christofer Lendel1, Peter Damberg.   

Abstract

A powerful experiment for the investigation of conformational properties of unstructured states of proteins is presented. The method combines a phase sensitive J-resolved experiment with a (1)H-(15)N SOFAST-HMQC to provide a 3D spectrum with an E.COSY pattern originating from splittings due to (3)J(HNH alpha) and (2)J(NH alpha) couplings. Thereby an effectively homodecoupled (1)H-(15)N correlation spectrum is obtained with significantly improved resolution and greatly reduced spectral overlap compared to standard HSQC and HMQC experiments. The (3)J(HNH alpha) is revealed in three independent ways directly from the peak positions, allowing for internal consistency testing. In addition, the natural H(N) linewidths can easily be extracted from the lineshapes. Thanks to the SOFAST principle, the limited sweep width needed in the J-dimension and the short phase cycle, data accumulation is rapid with excellent sensitivity per time unit. The experiment is demonstrated for the intrinsically unstructured 14 kDa protein alpha-synuclein.

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Year:  2009        PMID: 19330299     DOI: 10.1007/s10858-009-9313-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  29 in total

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Journal:  J Biomol NMR       Date:  2007-04-26       Impact factor: 2.835

2.  3D J-resolved HSQC, a novel approach to measuring 3JHN alpha. Application to paramagnetic proteins.

Authors:  G P Kelly; F W Muskett; D Whitford
Journal:  J Magn Reson B       Date:  1996-10

3.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

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4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

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Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Release of long-range tertiary interactions potentiates aggregation of natively unstructured alpha-synuclein.

Authors:  Carlos W Bertoncini; Young-Sang Jung; Claudio O Fernandez; Wolfgang Hoyer; Christian Griesinger; Thomas M Jovin; Markus Zweckstetter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-25       Impact factor: 11.205

6.  Conformational properties of alpha-synuclein in its free and lipid-associated states.

Authors:  D Eliezer; E Kutluay; R Bussell; G Browne
Journal:  J Mol Biol       Date:  2001-04-06       Impact factor: 5.469

7.  Mapping long-range interactions in alpha-synuclein using spin-label NMR and ensemble molecular dynamics simulations.

Authors:  Matthew M Dedmon; Kresten Lindorff-Larsen; John Christodoulou; Michele Vendruscolo; Christopher M Dobson
Journal:  J Am Chem Soc       Date:  2005-01-19       Impact factor: 15.419

8.  Precise vicinal coupling constants 3JHN alpha in proteins from nonlinear fits of J-modulated [15N,1H]-COSY experiments.

Authors:  M Billeter; D Neri; G Otting; Y Q Qian; K Wüthrich
Journal:  J Biomol NMR       Date:  1992-05       Impact factor: 2.835

9.  Systematic application of high-resolution, phase-sensitive two-dimensional 1H-NMR techniques for the identification of the amino-acid-proton spin systems in proteins. Rabbit metallothionein-2.

Authors:  D Neuhaus; G Wagner; M Vasák; J H Kägi; K Wüthrich
Journal:  Eur J Biochem       Date:  1985-09-02

Review 10.  Biophysical characterization of intrinsically disordered proteins.

Authors:  David Eliezer
Journal:  Curr Opin Struct Biol       Date:  2009-01-21       Impact factor: 6.809

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4.  ARTSY-J: Convenient and precise measurement of (3)JHNHα couplings in medium-size proteins from TROSY-HSQC spectra.

Authors:  Julien Roche; Jinfa Ying; Yang Shen; Dennis A Torchia; Ad Bax
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5.  Aβ monomers transiently sample oligomer and fibril-like configurations: ensemble characterization using a combined MD/NMR approach.

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Journal:  Biochemistry       Date:  2016-01-27       Impact factor: 3.162

7.  Comprehensive determination of (3)J (HNHalpha) for unfolded proteins using (13)C'-resolved spin-echo difference spectroscopy.

Authors:  Renee Otten; Kathleen Wood; Frans A A Mulder
Journal:  J Biomol NMR       Date:  2009-11-07       Impact factor: 2.835

8.  A General Method for Extracting Individual Coupling Constants from Crowded (1)H NMR Spectra.

Authors:  Davy Sinnaeve; Mohammadali Foroozandeh; Mathias Nilsson; Gareth A Morris
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  8 in total

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