Literature DB >> 19330112

Decomposition Analyses Applied to a Complex Ultradian Biorhythm: The Oscillating NADH Oxidase Activity of Plasma Membranes Having a Potential Time-Keeping (Clock) Function.

Ken Foster1, Nasim Anwar, Rhea Pogue, Dorothy M Morré, T W Keenan, D James Morré.   

Abstract

Seasonal decomposition analyses were applied to the statistical evaluation of an oscillating activity for a plasma membrane NADH oxidase activity with a temperature compensated period of 24 min. The decomposition fits were used to validate the cyclic oscillatory pattern. Three measured values, average percentage error (MAPE), a measure of the periodic oscillation, mean average deviation (MAD), a measure of the absolute average deviations from the fitted values, and mean standard deviation (MSD), the measure of standard deviation from the fitted values plus R-squared and the Henriksson-Merton p value were used to evaluate accuracy.Decomposition was carried out by fitting a trend line to the data, then detrending the data if necessary, by subtracting the trend component. The data, with or without detrending, were then smoothed by subtracting a centered moving average of length equal to the period length determined by Fourier analysis. Finally, the time series were decomposed into cyclic and error components. The findings not only validate the periodic nature of the major oscillations but suggest, as well, that the minor intervening fluctuations also recur within each period with a reproducible pattern of recurrence.

Entities:  

Keywords:  biological clock; circadian rhythm; cultured cells; decomposition analyses; temperature compensation; ultradian rhythm

Year:  2003        PMID: 19330112      PMCID: PMC2651612          DOI: 10.1080/15401420390844465

Source DB:  PubMed          Journal:  Nonlinearity Biol Toxicol Med        ISSN: 1540-1421


  31 in total

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Authors:  M W Young
Journal:  Trends Biochem Sci       Date:  2000-12       Impact factor: 13.807

2.  Molecular cloning and characterization of a tumor-associated, growth-related, and time-keeping hydroquinone (NADH) oxidase (tNOX) of the HeLa cell surface.

Authors:  Pin-Ju Chueh; Chinpal Kim; NaMi Cho; Dorothy M Morré; D James Morré
Journal:  Biochemistry       Date:  2002-03-19       Impact factor: 3.162

3.  A protein disulfide-thiol interchange activity of HeLa plasma membranes inhibited by the antitumor sulfonylurea N-(4-methylphenylsulfonyl)-N'-(4-chlorophenyl) urea (LY181984)

Authors:  D J Morré; E Jacobs; M Sweeting; R de Cabo; D M Morré
Journal:  Biochim Biophys Acta       Date:  1997-04-03

4.  Auxin-Stimulated NADH Oxidase Purified from Plasma Membrane of Soybean.

Authors:  A O Brightman; R Barr; F L Crane; D J Morré
Journal:  Plant Physiol       Date:  1988-04       Impact factor: 8.340

5.  The inverse periodogram: a linearising, inverting modification of norm-analysis.

Authors:  D A Gilbert; A C Joosting
Journal:  Biosystems       Date:  1994       Impact factor: 1.973

6.  mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop.

Authors:  K Kume; M J Zylka; S Sriram; L P Shearman; D R Weaver; X Jin; E S Maywood; M H Hastings; S M Reppert
Journal:  Cell       Date:  1999-07-23       Impact factor: 41.582

7.  The search for rhythmicity in biological time-series.

Authors:  J T Enright
Journal:  J Theor Biol       Date:  1965-05       Impact factor: 2.691

8.  A molecular mechanism regulating rhythmic output from the suprachiasmatic circadian clock.

Authors:  X Jin; L P Shearman; D R Weaver; M J Zylka; G J de Vries; S M Reppert
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

9.  Selective Inhibition of Auxin-Stimulated NADH Oxidase Activity and Elongation Growth of Soybean Hypocotyls by Thiol Reagents.

Authors:  D. J. Morre; A. O. Brightman; A. Hidalgo; P. Navas
Journal:  Plant Physiol       Date:  1995-04       Impact factor: 8.340

10.  Measurement of protein using bicinchoninic acid.

Authors:  P K Smith; R I Krohn; G T Hermanson; A K Mallia; F H Gartner; M D Provenzano; E K Fujimoto; N M Goeke; B J Olson; D C Klenk
Journal:  Anal Biochem       Date:  1985-10       Impact factor: 3.365

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  5 in total

1.  An aging-related cell surface NADH oxidase (arNOX) generates superoxide and is inhibited by coenzyme Q.

Authors:  Dorothy M Morré; Fenghui Guo; D James Morré
Journal:  Mol Cell Biochem       Date:  2003-12       Impact factor: 3.396

2.  Structural changes revealed by Fourier transform infrared and circular dichroism spectroscopic analyses underlie tNOX periodic oscillations.

Authors:  Chinpal Kim; Sara Layman; Dorothy M Morré; D James Morré
Journal:  Dose Response       Date:  2006-05-01       Impact factor: 2.658

3.  Spectroscopic Analyses of Oscillations in ECTO-NOX-Catalyzed Oxidation of NADH.

Authors:  D James Morré; Dorothy M Morré
Journal:  Nonlinearity Biol Toxicol Med       Date:  2003-07

4.  Periodic fluctuations in oxygen consumption comparing HeLa (cancer) and CHO (non-cancer) cells and response to external NAD(P)+/NAD(P)H.

Authors:  John Orczyk; Dorothy M Morré; D James Morré
Journal:  Mol Cell Biochem       Date:  2005-05       Impact factor: 3.396

5.  ENOX2 target for the anticancer isoflavone ME-143.

Authors:  D James Morré; Theodore Korty; Christiaan Meadows; Laura M C Ades; Dorothy M Morré
Journal:  Oncol Res       Date:  2014       Impact factor: 5.574

  5 in total

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