Literature DB >> 19325832

The new unified theory of ATP synthesis/hydrolysis and muscle contraction, its manifold fundamental consequences and mechanistic implications and its applications in health and disease.

Sunil Nath1,2.   

Abstract

Complete details of the thermodynamics and molecular mechanisms of ATP synthesis/hydrolysis and muscle contraction are offered from the standpoint of the torsional mechanism of energy transduction and ATP synthesis and the rotation-uncoiling-tilt (RUT) energy storage mechanism of muscle contraction. The manifold fundamental consequences and mechanistic implications of the unified theory for oxidative phosphorylation and muscle contraction are explained. The consistency of current mechanisms of ATP synthesis and muscle contraction with experiment is assessed, and the novel insights of the unified theory are shown to take us beyond the binding change mechanism, the chemiosmotic theory and the lever arm model. It is shown from first principles how previous theories of ATP synthesis and muscle contraction violate both the first and second laws of thermodynamics, necessitating their revision. It is concluded that the new paradigm, ten years after making its first appearance, is now perfectly poised to replace the older theories. Finally, applications of the unified theory in cell life and cell death are outlined and prospects for future research are explored. While it is impossible to cover each and every specific aspect of the above, an attempt has been made here to address all the pertinent details and what is presented should be sufficient to convince the reader of the novelty, originality, breakthrough nature and power of the unified theory, its manifold fundamental consequences and mechanistic implications, and its applications in health and disease.

Entities:  

Keywords:  Apoptosis; Bioenergetics; Energy transduction; F1FO-ATP synthase; Mechanochemistry; Molecular systems biology; Myosin and kinesin; Quantized theory of biological molecular machines; Rotation-uncoiling-tilt (RUT) energy storage mechanism of muscle contraction; Torsional mechanism of energy transduction and ATP synthesis

Year:  2008        PMID: 19325832      PMCID: PMC2635747          DOI: 10.3390/ijms9091784

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   6.208


  74 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Kinetic modeling of ATP synthesis by ATP synthase and its mechanistic implications.

Authors:  S Nath; S Jain
Journal:  Biochem Biophys Res Commun       Date:  2000-06-16       Impact factor: 3.575

3.  Temperature dependence of force, velocity, and processivity of single kinesin molecules.

Authors:  K Kawaguchi; S Ishiwata
Journal:  Biochem Biophys Res Commun       Date:  2000-06-16       Impact factor: 3.575

4.  Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis.

Authors:  R I Menz; J E Walker; A G Leslie
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

5.  Distinguishing inchworm and hand-over-hand processive kinesin movement by neck rotation measurements.

Authors:  Wei Hua; Johnson Chung; Jeff Gelles
Journal:  Science       Date:  2002-02-01       Impact factor: 47.728

Review 6.  The adenine nucleotide translocator in apoptosis.

Authors:  Anne-Sophie Belzacq; Helena L A Vieira; Guido Kroemer; Catherine Brenner
Journal:  Biochimie       Date:  2002 Feb-Mar       Impact factor: 4.079

7.  Contraction characteristics and ATPase activity of skeletal muscle fibers in the presence of antibody to myosin subfragment 2.

Authors:  H Sugi; T Kobayashi; T Gross; K Noguchi; T Karr; W F Harrington
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

8.  Mechanics of the kinesin step.

Authors:  N J Carter; R A Cross
Journal:  Nature       Date:  2005-05-19       Impact factor: 49.962

9.  The ATP-to-oxygen stoichiometries of oxidative phosphorylation by rat liver mitochondria. An analysis of ADP-induced oxygen jumps by linear nonequilibrium thermodynamics.

Authors:  J J Lemasters
Journal:  J Biol Chem       Date:  1984-11-10       Impact factor: 5.157

10.  The role of tryptophan 272 in the Paracoccus denitrificans cytochrome c oxidase.

Authors:  Fraser MacMillan; Kerstin Budiman; Heike Angerer; Hartmut Michel
Journal:  FEBS Lett       Date:  2006-01-26       Impact factor: 4.124

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  9 in total

Review 1.  Beyond the chemiosmotic theory: analysis of key fundamental aspects of energy coupling in oxidative phosphorylation in the light of a torsional mechanism of energy transduction and ATP synthesis--invited review part 2.

Authors:  Sunil Nath
Journal:  J Bioenerg Biomembr       Date:  2010-05-19       Impact factor: 2.945

Review 2.  Beyond the chemiosmotic theory: analysis of key fundamental aspects of energy coupling in oxidative phosphorylation in the light of a torsional mechanism of energy transduction and ATP synthesis--invited review part 1.

Authors:  Sunil Nath
Journal:  J Bioenerg Biomembr       Date:  2010-05-20       Impact factor: 2.945

3.  A role for anions in ATP synthesis and its molecular mechanistic interpretation.

Authors:  Bhawana Agarwal
Journal:  J Bioenerg Biomembr       Date:  2011-06-07       Impact factor: 2.945

4.  New perspectives on photosynthetic phosphorylation in the light of a torsional mechanism of energy transduction and ATP synthesis.

Authors:  Sunil Nath; Ravikrishnan Elangovan
Journal:  J Bioenerg Biomembr       Date:  2011-11-15       Impact factor: 2.945

5.  Network representation and analysis of energy coupling mechanisms in cellular metabolism by a graph-theoretical approach.

Authors:  Sunil Nath
Journal:  Theory Biosci       Date:  2022-05-02       Impact factor: 1.315

6.  A mechano-chemiosmotic model for the coupling of electron and proton transfer to ATP synthesis in energy-transforming membranes: a personal perspective.

Authors:  Eldar A Kasumov; Ruslan E Kasumov; Irina V Kasumova
Journal:  Photosynth Res       Date:  2014-09-30       Impact factor: 3.573

7.  Maximum limit to the number of myosin II motors participating in processive sliding of actin.

Authors:  Khushboo Rastogi; Mohammed Shabeel Puliyakodan; Vikas Pandey; Sunil Nath; Ravikrishnan Elangovan
Journal:  Sci Rep       Date:  2016-08-24       Impact factor: 4.379

8.  Entropy Production and Its Application to the Coupled Nonequilibrium Processes of ATP Synthesis.

Authors:  Sunil Nath
Journal:  Entropy (Basel)       Date:  2019-07-30       Impact factor: 2.524

9.  Electrophysiological Experiments Revalidate the Two-ion Theory of Energy Coupling and ATP Synthesis.

Authors:  Sunil Nath
Journal:  Function (Oxf)       Date:  2022-02-14
  9 in total

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