Literature DB >> 19321747

A dedicated thioesterase of the Hotdog-fold family is required for the biosynthesis of the naphthoquinone ring of vitamin K1.

Joshua R Widhalm1, Chloë van Oostende, Fabienne Furt, Gilles J C Basset.   

Abstract

Phylloquinone (vitamin K(1)) is a bipartite molecule that consists of a naphthoquinone ring attached to a phytyl side chain. The coupling of these 2 moieties depends on the hydrolysis of the CoA thioester of 1,4-dihydroxy-2-naphthoate (DHNA), which forms the naphthalenoid backbone. It is not known whether such a hydrolysis is enzymatic or chemical. In this study, comparative genomic analyses identified orthologous genes of unknown function that in most species of cyanobacteria cluster with predicted phylloquinone biosynthetic genes. The encoded approximately 16-kDa proteins display homology with some Hotdog domain-containing CoA thioesterases that are involved in the catabolism of 4-hydroxybenzoyl-CoA and gentisyl-CoA (2,5-dihydroxybenzoyl-CoA) in certain soil-dwelling bacteria. The Synechocystis ortholog, encoded by gene slr0204, was expressed as a recombinant protein and was found to form DHNA as reaction product. Unlike its homologs in the Hotdog domain family, Slr0204 showed strict substrate specificity. The Synechocystis slr0204 knockout was devoid of DHNA-CoA thioesterease activity and accumulated DHNA-CoA. As a result, knockout cells contained 13-fold less phylloquinone than their wild-type counterparts and displayed the typical photosensitivity to high light associated to phylloquinone deficiency in cyanobacteria.

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Year:  2009        PMID: 19321747      PMCID: PMC2660889          DOI: 10.1073/pnas.0900738106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

1.  The BH1999 protein of Bacillus halodurans C-125 is gentisyl-coenzyme A thioesterase.

Authors:  Zhihao Zhuang; Feng Song; Hideto Takami; Debra Dunaway-Mariano
Journal:  J Bacteriol       Date:  2004-01       Impact factor: 3.490

2.  A new intermediate in naphthoquinone and menaquinone biosynthesis.

Authors:  P Dansette; R Azerad
Journal:  Biochem Biophys Res Commun       Date:  1970-09-10       Impact factor: 3.575

Review 3.  Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication.

Authors:  M D Collins; D Jones
Journal:  Microbiol Rev       Date:  1981-06

4.  X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase.

Authors:  James B Thoden; Hazel M Holden; Zhihao Zhuang; Debra Dunaway-Mariano
Journal:  J Biol Chem       Date:  2002-05-07       Impact factor: 5.157

5.  Isolation and characterization of the three polypeptide components of 4-chlorobenzoate dehalogenase from Pseudomonas sp. strain CBS-3.

Authors:  K H Chang; P H Liang; W Beck; J D Scholten; D Dunaway-Mariano
Journal:  Biochemistry       Date:  1992-06-23       Impact factor: 3.162

6.  Menaquinone (vitamin K2) biosynthesis: nucleotide sequence and expression of the menB gene from Escherichia coli.

Authors:  V Sharma; K Suvarna; R Meganathan; M E Hudspeth
Journal:  J Bacteriol       Date:  1992-08       Impact factor: 3.490

7.  The menD and menE homologs code for 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylate synthase and O-succinylbenzoic acid-CoA synthase in the phylloquinone biosynthetic pathway of Synechocystis sp. PCC 6803.

Authors:  T Wade Johnson; Sushma Naithani; Charles Stewart; Boris Zybailov; A Daniel Jones; John H Golbeck; Parag R Chitnis
Journal:  Biochim Biophys Acta       Date:  2003-03-06

8.  Role of quinones in electron transport to oxygen and nitrate in Escherichia coli. Studies with a ubiA- menA- double quinone mutant.

Authors:  B J Wallace; I G Young
Journal:  Biochim Biophys Acta       Date:  1977-07-07

9.  Crystal structure of Mycobacterium tuberculosis MenB, a key enzyme in vitamin K2 biosynthesis.

Authors:  James J Truglio; Karsten Theis; Yuguo Feng; Ramona Gajda; Carl Machutta; Peter J Tonge; Caroline Kisker
Journal:  J Biol Chem       Date:  2003-08-08       Impact factor: 5.157

10.  The Hotdog fold: wrapping up a superfamily of thioesterases and dehydratases.

Authors:  Shane C Dillon; Alex Bateman
Journal:  BMC Bioinformatics       Date:  2004-08-12       Impact factor: 3.169

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  23 in total

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Authors:  David C Cantu; Yingfei Chen; Peter J Reilly
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

2.  A bicarbonate cofactor modulates 1,4-dihydroxy-2-naphthoyl-coenzyme a synthase in menaquinone biosynthesis of Escherichia coli.

Authors:  Ming Jiang; Minjiao Chen; Zu-Feng Guo; Zhihong Guo
Journal:  J Biol Chem       Date:  2010-07-19       Impact factor: 5.157

3.  Allosteric regulation of menaquinone (vitamin K2) biosynthesis in the human pathogen Mycobacterium tuberculosis.

Authors:  Ghader Bashiri; Laura V Nigon; Ehab N M Jirgis; Ngoc Anh Thu Ho; Tamsyn Stanborough; Stephanie S Dawes; Edward N Baker; Esther M M Bulloch; Jodie M Johnston
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4.  Co-evolution of HAD phosphatase and hotdog-fold thioesterase domain function in the menaquinone-pathway fusion proteins BF1314 and PG1653.

Authors:  Min Wang; Feng Song; Rui Wu; Karen N Allen; Patrick S Mariano; Debra Dunaway-Mariano
Journal:  FEBS Lett       Date:  2013-07-10       Impact factor: 4.124

5.  Thioesterase enzyme families: Functions, structures, and mechanisms.

Authors:  Benjamin T Caswell; Caio C de Carvalho; Hung Nguyen; Monikrishna Roy; Tin Nguyen; David C Cantu
Journal:  Protein Sci       Date:  2022-01-04       Impact factor: 6.725

6.  Functional convergence of structurally distinct thioesterases from cyanobacteria and plants involved in phylloquinone biosynthesis.

Authors:  Fabienne Furt; William J Allen; Joshua R Widhalm; Peter Madzelan; Robert C Rizzo; Gilles Basset; Mark A Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-09-20

7.  A Methyl 4-Oxo-4-phenylbut-2-enoate with in Vivo Activity against MRSA that Inhibits MenB in the Bacterial Menaquinone Biosynthesis Pathway.

Authors:  Joe S Matarlo; Yang Lu; Fereidoon Daryaee; Taraneh Daryaee; Bela Ruzsicska; Stephen G Walker; Peter J Tonge
Journal:  ACS Infect Dis       Date:  2016-03-07       Impact factor: 5.084

8.  Identification of a hotdog fold thioesterase involved in the biosynthesis of menaquinone in Escherichia coli.

Authors:  Minjiao Chen; Xinyu Ma; Xiaolei Chen; Ming Jiang; Haigang Song; Zhihong Guo
Journal:  J Bacteriol       Date:  2013-04-05       Impact factor: 3.490

Review 9.  Vitamin deficiencies in humans: can plant science help?

Authors:  Teresa B Fitzpatrick; Gilles J C Basset; Patrick Borel; Fernando Carrari; Dean DellaPenna; Paul D Fraser; Hanjo Hellmann; Sonia Osorio; Christophe Rothan; Victoriano Valpuesta; Catherine Caris-Veyrat; Alisdair R Fernie
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10.  Structure and reactivity of Bacillus subtilis MenD catalyzing the first committed step in menaquinone biosynthesis.

Authors:  Alice Dawson; Minjiao Chen; Paul K Fyfe; Zhihong Guo; William N Hunter
Journal:  J Mol Biol       Date:  2010-06-18       Impact factor: 5.469

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