Literature DB >> 19317505

Active-site motions and polarity enhance catalytic turnover of hydrated subtilisin dissolved in organic solvents.

Elton P Hudson1, Ross K Eppler, Julianne M Beaudoin, Jonathan S Dordick, Jeffrey A Reimer, Douglas S Clark.   

Abstract

The enzyme subtilisin Carlsberg was surfactant-solubilized into two organic solvents, isooctane and tetrahydrofuran, and hydrated through stepwise changes in the thermodynamic water activity, a(w). The apparent turnover number k(cat)(app) in these systems ranged from 0.2 to 80 s(-1) and increased 11-fold in isooctane and up to 50-fold in tetrahydrofuran with increasing a(w). (19)F NMR relaxation experiments employing an active-site inhibitor were used to assess the dependence of active-site motions on a(w). The rates of NMR-derived fast (k > 10(7) s(-1)) and slow (k < 10(4) s(-1)) active-site motions increased in both solvents upon hydration, but only the slow motions correlated with k(cat). The (19)F chemical shift was a sensitive probe of the local electronic environment and provided an empirical measure of the active-site dielectric constant epsilon(as), which increased with hydration to epsilon(as) approximately 13 in each solvent. In both solvents, the transition state free energy data and epsilon(as) followed Kirkwood's model for the continuum solvation of a dipole, indicating that water also enhanced catalysis by altering the active-site's electronic environment and increasing its polarity to better stabilize the transition state. These results reveal that favorable dynamic and electrostatic effects both contribute to accelerated catalysis by solubilized subtilisin Carlsberg upon hydration in organic solvents.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19317505      PMCID: PMC4000694          DOI: 10.1021/ja806996q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  33 in total

1.  Subtilisin BPN' at 1.6 A resolution: analysis for discrete disorder and comparison of crystal forms.

Authors:  T Gallagher; J Oliver; R Bott; C Betzel; G L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-11-01

Review 2.  How do serine proteases really work?

Authors:  A Warshel; G Naray-Szabo; F Sussman; J K Hwang
Journal:  Biochemistry       Date:  1989-05-02       Impact factor: 3.162

3.  19F NMR chemical shifts induced by a helical peptide.

Authors:  Matthew A Kubasik; Erin Daly; Adam Blom
Journal:  Chembiochem       Date:  2006-07       Impact factor: 3.164

4.  Enzyme activity and flexibility at very low hydration.

Authors:  V Kurkal; R M Daniel; John L Finney; M Tehei; R V Dunn; Jeremy C Smith
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

5.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

6.  Mechanism of extraction of chymotrypsin into isooctane at very low concentrations of aerosol OT in the absence of reversed micelles.

Authors:  V M Paradkar; J S Dordick
Journal:  Biotechnol Bioeng       Date:  1994-03-15       Impact factor: 4.530

7.  Nuclear magnetic resonance studies of p-fluorocinnamate--alpha-chymotrypsin complexes.

Authors:  J T Gerig; B A Halley; C E Ortiz
Journal:  J Am Chem Soc       Date:  1977-09-14       Impact factor: 15.419

8.  Fluorotyrosine alkaline phosphatase. 19F nuclear magnetic resonance relaxation times and molecular motion of the individual fluorotyrosines.

Authors:  W E Hull; B D Sykes
Journal:  Biochemistry       Date:  1974-08-13       Impact factor: 3.162

9.  The effect of water on enzyme action in organic media.

Authors:  A Zaks; A M Klibanov
Journal:  J Biol Chem       Date:  1988-06-15       Impact factor: 5.157

10.  Contribution of long-range electrostatic interactions to the stabilization of the catalytic transition state of the serine protease subtilisin BPN'.

Authors:  S E Jackson; A R Fersht
Journal:  Biochemistry       Date:  1993-12-21       Impact factor: 3.162

View more
  6 in total

1.  "Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution.

Authors:  Jordi Silvestre-Ryan; Yuchun Lin; Jhih-Wei Chu
Journal:  PLoS Comput Biol       Date:  2011-03-24       Impact factor: 4.475

2.  Effect of prolonged exposure to organic solvents on the active site environment of subtilisin Carlsberg.

Authors:  Vibha Bansal; Yamixa Delgado; Ezio Fasoli; Amaris Ferrer; Kai Griebenow; Francesco Secundo; Gabriel L Barletta
Journal:  J Mol Catal B Enzym       Date:  2010-06-01

3.  Demystifying fluorine chemical shifts: electronic structure calculations address origins of seemingly anomalous (19)F-NMR spectra of fluorohistidine isomers and analogues.

Authors:  Chandana Kasireddy; James G Bann; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2015-11-11       Impact factor: 3.676

4.  Activity and enantioselectivity of the hydroxynitrile lyase MeHNL in dry organic solvents.

Authors:  Monica Paravidino; Menno J Sorgedrager; Romano V A Orru; Ulf Hanefeld
Journal:  Chemistry       Date:  2010-07-05       Impact factor: 5.236

5.  Sulfonyl fluorides as privileged warheads in chemical biology.

Authors:  Arjun Narayanan; Lyn H Jones
Journal:  Chem Sci       Date:  2015-03-16       Impact factor: 9.825

6.  Protease-catalysed direct asymmetric Mannich reaction in organic solvent.

Authors:  Yang Xue; Ling-Po Li; Yan-Hong He; Zhi Guan
Journal:  Sci Rep       Date:  2012-10-23       Impact factor: 4.379

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.