Literature DB >> 19308940

Solution structure of a locked nucleic acid modified quadruplex: introducing the V4 folding topology.

Jakob T Nielsen1, Khalil Arar, Michael Petersen.   

Abstract

Sharp curves: The structure of a locked nucleic acid modified telomeric sequence from Oxytricha nova displays a remarkable folding topology, distinct from the native O. nova quadruplex. Each guanine stretch folds back in a V-shaped turn that puts the first and fourth guanines in the same tetrad, looping over a tetrad with a sharp turn in the DNA backbone, showing how subtle interplay between sequence and conformation defines the folding topology.

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Year:  2009        PMID: 19308940     DOI: 10.1002/anie.200806244

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  18 in total

Review 1.  The many twists and turns of DNA: template, telomere, tool, and target.

Authors:  Martin Egli; Pradeep S Pallan
Journal:  Curr Opin Struct Biol       Date:  2010-04-08       Impact factor: 6.809

Review 2.  In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?

Authors:  Janos Sagi
Journal:  J Nucleic Acids       Date:  2017-10-18

3.  A putative G-quadruplex structure in the proximal promoter of VEGFR-2 has implications for drug design to inhibit tumor angiogenesis.

Authors:  Yaping Liu; Wenxian Lan; Chunxi Wang; Chunyang Cao
Journal:  J Biol Chem       Date:  2018-04-17       Impact factor: 5.157

4.  Solution structure of a unique G-quadruplex scaffold adopted by a guanosine-rich human intronic sequence.

Authors:  Vitaly Kuryavyi; Dinshaw J Patel
Journal:  Structure       Date:  2010-01-13       Impact factor: 5.006

5.  Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter.

Authors:  Vitaly Kuryavyi; Anh Tuân Phan; Dinshaw J Patel
Journal:  Nucleic Acids Res       Date:  2010-06-21       Impact factor: 16.971

6.  Enhanced anti-HIV-1 activity of G-quadruplexes comprising locked nucleic acids and intercalating nucleic acids.

Authors:  Erik B Pedersen; Jakob T Nielsen; Claus Nielsen; Vyacheslav V Filichev
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

7.  Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T.

Authors:  Wenqiang Fu; Haitao Jing; Xiaojuan Xu; Suping Xu; Tao Wang; Wenxuan Hu; Huihui Li; Na Zhang
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

8.  Guanine base stacking in G-quadruplex nucleic acids.

Authors:  Christopher Jacques Lech; Brahim Heddi; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2012-12-24       Impact factor: 16.971

9.  Sugar-modified G-quadruplexes: effects of LNA-, 2'F-RNA- and 2'F-ANA-guanosine chemistries on G-quadruplex structure and stability.

Authors:  Zhe Li; Christopher Jacques Lech; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2013-12-25       Impact factor: 16.971

10.  G-rich VEGF aptamer with locked and unlocked nucleic acid modifications exhibits a unique G-quadruplex fold.

Authors:  Maja Marušič; Rakesh N Veedu; Jesper Wengel; Janez Plavec
Journal:  Nucleic Acids Res       Date:  2013-08-08       Impact factor: 16.971

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