Literature DB >> 19307718

Reducing radiation damage in macromolecular crystals at synchrotron sources.

Edward A Stern1, Yizhak Yacoby, Gerald T Seidler, Kenneth P Nagle, Micah P Prange, Adam P Sorini, John J Rehr, Andrzej Joachimiak.   

Abstract

A new strategy is presented to reduce primary X-ray damage in macromolecular crystallography. The strategy is based on separating the diffracting and damaged regions as much as feasible. The source of the radiation damage to macromolecular crystals is from two primary mechanisms: the direct excitations of electrons by absorption, and inelastic scattering of the X-rays. The first produces photoelectrons with their accompanying Auger electrons from relaxation of the core hole and the second creates Compton electrons. The properties of these two mechanisms and calculations of primary X-ray damage quantify how to modify the spatial distribution of X-rays to reduce the deleterious effects of radiation damage. By focusing the incident X-rays into vertical stripes, it is estimated that the survival (the time during which quality diffraction data can be obtained with a given X-ray flux) of large crystals can be increased by at least a factor of 1.6, while for very small platelet crystals the survival can be increased by up to a factor of 14.

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Year:  2009        PMID: 19307718     DOI: 10.1107/S090744490900540X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  9 in total

1.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

2.  Purification, crystallization and room-temperature X-ray diffraction of inositol dehydrogenase LcIDH2 from Lactobacillus casei BL23.

Authors:  Drew Bertwistle; Linda Vogt; Hari Babu Aamudalapalli; David R J Palmer; David A R Sanders
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-06-19       Impact factor: 1.056

3.  Radiation damage in protein crystals is reduced with a micron-sized X-ray beam.

Authors:  Ruslan Sanishvili; Derek W Yoder; Sudhir Babu Pothineni; Gerd Rosenbaum; Shenglan Xu; Stefan Vogt; Sergey Stepanov; Oleg A Makarov; Stephen Corcoran; Richard Benn; Venugopalan Nagarajan; Janet L Smith; Robert F Fischetti
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

4.  Radiation damage in macromolecular crystallography: what is it and why should we care?

Authors:  Elspeth F Garman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 5.  High-throughput crystallography for structural genomics.

Authors:  Andrzej Joachimiak
Journal:  Curr Opin Struct Biol       Date:  2009-09-16       Impact factor: 6.809

6.  Kinetic modeling of the X-ray-induced damage to a metalloprotein.

Authors:  Katherine M Davis; Irina Kosheleva; Robert W Henning; Gerald T Seidler; Yulia Pushkar
Journal:  J Phys Chem B       Date:  2013-07-25       Impact factor: 2.991

7.  Raster microdiffraction with synchrotron radiation of hydrated biopolymers with nanometre step-resolution: case study of starch granules.

Authors:  C Riekel; M Burghammer; R J Davies; E Di Cola; C König; H T Lemke; J L Putaux; S Schöder
Journal:  J Synchrotron Radiat       Date:  2010-09-03       Impact factor: 2.616

8.  Bragg coherent diffraction imaging and metrics for radiation damage in protein micro-crystallography.

Authors:  H D Coughlan; C Darmanin; H J Kirkwood; N W Phillips; D Hoxley; J N Clark; D J Vine; F Hofmann; R J Harder; E Maxey; B Abbey
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

9.  Lifetimes and spatio-temporal response of protein crystals in intense X-ray microbeams.

Authors:  Matthew A Warkentin; Hakan Atakisi; Jesse B Hopkins; Donald Walko; Robert E Thorne
Journal:  IUCrJ       Date:  2017-10-13       Impact factor: 4.769

  9 in total

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