Literature DB >> 19306878

Crystal structure of polysaccharide lyase family 20 endo-beta-1,4-glucuronan lyase from the filamentous fungus Trichoderma reesei.

Naotake Konno1, Takuya Ishida, Kiyohiko Igarashi, Shinya Fushinobu, Naoto Habu, Masahiro Samejima, Akira Isogai.   

Abstract

The crystal structure of endo-beta-(1-->4)-glucuronan lyase from Trichoderma reesei (TrGL) has been determined at 1.8A resolution as the first three-dimensional structure of polysaccharide lyase (PL) family 20. TrGL has a typical beta-jelly roll fold, which is similar to glycoside hydrolase family 16 and PL7 enzymes. A calcium ion is bound to the site far from the cleft and appears to contribute to the stability. There are several completely conserved residues in the cleft. Possible catalytic residues are predicted based on structural comparison with PL7 alginate lyase A1-II'.

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Year:  2009        PMID： 19306878     DOI： 10.1016/j.febslet.2009.03.034

Source DB:  PubMed          Journal:  FEBS Lett        ISSN： 0014-5793            Impact factor:   4.124


  13 in total

1.  Structural and functional characterization of PL28 family ulvan lyase NLR48 from Nonlabens ulvanivorans.

Authors:  ThirumalaiSelvi Ulaganathan; Ehud Banin; William Helbert; Miroslaw Cygler
Journal:  J Biol Chem       Date:  2018-06-06       Impact factor: 5.157

2.  Isolation of mutant alginate lyases with cleavage specificity for di-guluronic acid linkages.

Authors:  Anne Tøndervik; Geir Klinkenberg; Olav A Aarstad; Finn Drabløs; Helga Ertesvåg; Trond E Ellingsen; Gudmund Skjåk-Bræk; Svein Valla; Håvard Sletta
Journal:  J Biol Chem       Date:  2010-09-07       Impact factor: 5.157

3.  Discovery of a Novel Glucuronan Lyase System in Trichoderma parareesei.

Authors:  Bo Pilgaard; Marlene Vuillemin; Line Munk; Jesper Holck; Sebastian Meier; Casper Wilkens; Anne S Meyer
Journal:  Appl Environ Microbiol       Date:  2021-10-27       Impact factor: 5.005

4.  Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action.

Authors:  Kohei Ogura; Masayuki Yamasaki; Takashi Yamada; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  J Biol Chem       Date:  2009-12-18       Impact factor: 5.157

5.  In vitro interaction between alginate lyase and amphotericin B against Aspergillus fumigatus biofilm determined by different methods.

Authors:  Francesca Bugli; Brunella Posteraro; Massimiliano Papi; Riccardo Torelli; Alessandro Maiorana; Francesco Paroni Sterbini; Patrizia Posteraro; Maurizio Sanguinetti; Marco De Spirito
Journal:  Antimicrob Agents Chemother       Date:  2012-12-21       Impact factor: 5.191

6.  In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3).

Authors:  Noha H Youssef; Ibrahim F Farag; Christian Rinke; Steven J Hallam; Tanja Woyke; Mostafa S Elshahed
Journal:  PLoS One       Date:  2015-06-03       Impact factor: 3.240

7.  Draft Genome Sequence of Brevundimonas sp. Strain SH203, Producing Cellouronate (β-1,4-Linked Polyglucuronate) Lyase.

Authors:  Tomohiro Suzuki; Masako Kikuchi; Naotake Konno; Naoto Habu
Journal:  Genome Announc       Date:  2017-05-04

Review 8.  Biotechnology Potential of Marine Fungi Degrading Plant and Algae Polymeric Substrates.

Authors:  Larissa Balabanova; Lubov Slepchenko; Oksana Son; Liudmila Tekutyeva
Journal:  Front Microbiol       Date:  2018-07-10       Impact factor: 5.640

9.  The crystal structure of the core domain of a cellulose induced protein (Cip1) from Hypocrea jecorina, at 1.5 Å resolution.

Authors:  Frida Jacobson; Saeid Karkehabadi; Henrik Hansson; Frits Goedegebuur; Louise Wallace; Colin Mitchinson; Kathleen Piens; Ingeborg Stals; Mats Sandgren
Journal:  PLoS One       Date:  2013-09-05       Impact factor: 3.240

10.  Regioselectivity of oxidation by a polysaccharide monooxygenase from Chaetomium thermophilum.

Authors:  Chen Chen; Jinyin Chen; Zhigang Geng; Meixia Wang; Ning Liu; Duochuan Li
Journal:  Biotechnol Biofuels       Date:  2018-06-05       Impact factor: 6.040
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