Literature DB >> 19306043

A genome-wide survey on basic helix-loop-helix transcription factors in rat and mouse.

Xiaodong Zheng1, X Zheng, Yong Wang, Y Wang, Qin Yao, Q Yao, Zhe Yang, Z Yang, Keping Chen, K Chen.   

Abstract

The basic helix-loop-helix (bHLH) proteins play essential roles in a wide range of developmental processes in higher organisms. bHLH family members have been identified in over 20 organisms, including nematode, fruit fly, and human. Our study identified 114 rat and 14 additional mouse bHLH members in rat and mouse genomes, respectively. Phylogenetic analyses revealed that both rat and mouse had 49, 26, 15, 4, 12, and 4 bHLH members in groups A, B, C, D, E, and F, respectively. Only the rat Mxi1 gene has two copies in the genome. All other rat bHLH genes and all mouse bHLH genes are single-copy genes. The chromosomal distribution pattern of mouse, rat, and human bHLH genes suggests the emergence of some bHLH genes through gene duplication, which probably happened at least before the divergence of vertebrates from invertebrates. The present study provides useful information for future studies using rat as a model animal for mammalian development.

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Year:  2009        PMID: 19306043     DOI: 10.1007/s00335-009-9176-7

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  16 in total

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Authors:  M E Massari; C Murre
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

2.  A genomewide survey of developmentally relevant genes in Ciona intestinalis. I. Genes for bHLH transcription factors.

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Journal:  Dev Genes Evol       Date:  2003-05-08       Impact factor: 0.900

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Authors:  D T Jones; W R Taylor; J M Thornton
Journal:  Comput Appl Biosci       Date:  1992-06

4.  Helix-loop-helix proteins in Schwann cells: a study of regulation and subcellular localization of Ids, REB, and E12/47 during embryonic and postnatal development.

Authors:  H J Stewart; G Zoidl; M Rossner; A Brennan; C Zoidl; K A Nave; R Mirsky; K R Jessen
Journal:  J Neurosci Res       Date:  1997-12-01       Impact factor: 4.164

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Authors:  A R Ferré-D'Amaré; G C Prendergast; E B Ziff; S K Burley
Journal:  Nature       Date:  1993-05-06       Impact factor: 49.962

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Journal:  Dev Genes Evol       Date:  2007-10       Impact factor: 0.900

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Authors:  Yong Wang; Keping Chen; Qin Yao; Wenbing Wang; Zhi Zhu
Journal:  J Insect Sci       Date:  2008       Impact factor: 1.857

9.  Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics.

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Journal:  BMC Evol Biol       Date:  2007-03-02       Impact factor: 3.260

10.  NeuroD regulates multiple functions in the developing neural retina in rodent.

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Journal:  Development       Date:  1999-01       Impact factor: 6.868

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  18 in total

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Journal:  Mol Genet Genomics       Date:  2015-02-17       Impact factor: 3.291

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Journal:  Mol Genet Genomics       Date:  2014-11-18       Impact factor: 3.291

Review 3.  Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.

Authors:  Michael K Skinner; Alan Rawls; Jeanne Wilson-Rawls; Eric H Roalson
Journal:  Differentiation       Date:  2010-03-10       Impact factor: 3.880

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Journal:  Mamm Genome       Date:  2017-03-15       Impact factor: 2.957

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Journal:  Am J Transl Res       Date:  2016-11-15       Impact factor: 4.060

6.  Genome-wide identification and analysis of the chicken basic helix-loop-helix factors.

Authors:  Wu-Yi Liu; Chun-Jiang Zhao
Journal:  Comp Funct Genomics       Date:  2010-05-03

7.  Classification and evolutionary analysis of the basic helix-loop-helix gene family in the green anole lizard, Anolis carolinensis.

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Journal:  Mol Genet Genomics       Date:  2013-06-12       Impact factor: 3.291

8.  Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis).

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9.  A genome-wide identification and analysis of the basic helix-loop-helix transcription factors in the ponerine ant, Harpegnathos saltator.

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10.  The basic helix-loop-helix transcription factor family in the pea aphid, Acyrthosiphon pisum.

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Journal:  J Insect Sci       Date:  2011       Impact factor: 1.857

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