Literature DB >> 19299868

Significant progress in predicting the crystal structures of small organic molecules--a report on the fourth blind test.

Graeme M Day1, Timothy G Cooper, Aurora J Cruz-Cabeza, Katarzyna E Hejczyk, Herman L Ammon, Stephan X M Boerrigter, Jeffrey S Tan, Raffaele G Della Valle, Elisabetta Venuti, Jovan Jose, Shridhar R Gadre, Gautam R Desiraju, Tejender S Thakur, Bouke P van Eijck, Julio C Facelli, Victor E Bazterra, Marta B Ferraro, Detlef W M Hofmann, Marcus A Neumann, Frank J J Leusen, John Kendrick, Sarah L Price, Alston J Misquitta, Panagiotis G Karamertzanis, Gareth W A Welch, Harold A Scheraga, Yelena A Arnautova, Martin U Schmidt, Jacco van de Streek, Alexandra K Wolf, Bernd Schweizer.   

Abstract

We report on the organization and outcome of the fourth blind test of crystal structure prediction, an international collaborative project organized to evaluate the present state in computational methods of predicting the crystal structures of small organic molecules. There were 14 research groups which took part, using a variety of methods to generate and rank the most likely crystal structures for four target systems: three single-component crystal structures and a 1:1 cocrystal. Participants were challenged to predict the crystal structures of the four systems, given only their molecular diagrams, while the recently determined but as-yet unpublished crystal structures were withheld by an independent referee. Three predictions were allowed for each system. The results demonstrate a dramatic improvement in rates of success over previous blind tests; in total, there were 13 successful predictions and, for each of the four targets, at least two groups correctly predicted the observed crystal structure. The successes include one participating group who correctly predicted all four crystal structures as their first ranked choice, albeit at a considerable computational expense. The results reflect important improvements in modelling methods and suggest that, at least for the small and fairly rigid types of molecules included in this blind test, such calculations can be constructively applied to help understand crystallization and polymorphism of organic molecules.

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Year:  2009        PMID: 19299868     DOI: 10.1107/S0108768109004066

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  28 in total

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Authors:  Terry Richard Stouch
Journal:  J Comput Aided Mol Des       Date:  2012-01-14       Impact factor: 3.686

2.  The character of molecular modeling.

Authors:  Anthony Nicholls
Journal:  J Comput Aided Mol Des       Date:  2011-12-17       Impact factor: 3.686

3.  A very short history of structure-based design: how did we get here and where do we need to go?

Authors:  Jeff Blaney
Journal:  J Comput Aided Mol Des       Date:  2011-12-11       Impact factor: 3.686

4.  Modular and predictable assembly of porous organic molecular crystals.

Authors:  James T A Jones; Tom Hasell; Xiaofeng Wu; John Bacsa; Kim E Jelfs; Marc Schmidtmann; Samantha Y Chong; Dave J Adams; Abbie Trewin; Florian Schiffman; Furio Cora; Ben Slater; Alexander Steiner; Graeme M Day; Andrew I Cooper
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

5.  Crystal Structure Prediction from First Principles: The Crystal Structures of Glycine.

Authors:  Albert M Lund; Gabriel I Pagola; Anita M Orendt; Marta B Ferraro; Julio C Facelli
Journal:  Chem Phys Lett       Date:  2015-04-17       Impact factor: 2.328

6.  Heterogeneous nucleation of polymorphs on polymer surfaces: polymer-molecule interactions using a heterogeneous dielectric solvation model.

Authors:  Nanna Wahlberg; Anders Ø Madsen; Kurt V Mikkelsen
Journal:  J Mol Model       Date:  2018-06-09       Impact factor: 1.810

7.  Comparison of Methods To Reweight from Classical Molecular Simulations to QM/MM Potentials.

Authors:  Eric C Dybeck; Gerhard König; Bernard R Brooks; Michael R Shirts
Journal:  J Chem Theory Comput       Date:  2016-03-23       Impact factor: 6.006

8.  Unmasking a third polymorph of a benchmark crystal-structure-prediction compound.

Authors:  Saikat Roy; Adam J Matzger
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Validation of experimental molecular crystal structures with dispersion-corrected density functional theory calculations.

Authors:  Jacco van de Streek; Marcus A Neumann
Journal:  Acta Crystallogr B       Date:  2010-09-11

10.  The Structure, Thermodynamics and Solubility of Organic Crystals from Simulation with a Polarizable Force Field.

Authors:  Michael J Schnieders; Jonas Baltrusaitis; Yue Shi; Gaurav Chattree; Lianqing Zheng; Wei Yang; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2012-04-13       Impact factor: 6.006

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