Literature DB >> 19291412

Recent advances in structure-based virtual screening of G-protein coupled receptors.

Subramaniam Ananthan1, Wei Zhang, Judith Varady Hobrath.   

Abstract

In addition to the rhodopsin crystal structure, high-resolution crystal structures of ligand-mediated G-protein-coupled receptors (GPCRs) have recently become available, and these have become attractive templates for developing homology models of several GPCRs of therapeutic interest. These crystal structures and the homology models derived from them have provided significant insights into ligand-receptor interactions. Moreover, several studies have demonstrated that the structural models are indeed suitable for virtual screening of compound databases to identify new ligands for various GPCRs. Recent examples of such virtual screening against GPCRs are discussed in this review.

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Year:  2009        PMID: 19291412      PMCID: PMC2664893          DOI: 10.1208/s12248-009-9094-3

Source DB:  PubMed          Journal:  AAPS J        ISSN: 1550-7416            Impact factor:   4.009


  27 in total

1.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

Review 2.  Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-protein-coupled receptors (GPCRs).

Authors:  D C Teller; T Okada; C A Behnke; K Palczewski; R E Stenkamp
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

3.  Virtual screening of biogenic amine-binding G-protein coupled receptors: comparative evaluation of protein- and ligand-based virtual screening protocols.

Authors:  Andreas Evers; Gerhard Hessler; Hans Matter; Thomas Klabunde
Journal:  J Med Chem       Date:  2005-08-25       Impact factor: 7.446

Review 4.  Structure-based virtual screening of chemical libraries for drug discovery.

Authors:  Sutapa Ghosh; Aihua Nie; Jing An; Ziwei Huang
Journal:  Curr Opin Chem Biol       Date:  2006-05-03       Impact factor: 8.822

Review 5.  I want a new drug: G-protein-coupled receptors in drug development.

Authors:  Sabine Schlyer; Richard Horuk
Journal:  Drug Discov Today       Date:  2006-06       Impact factor: 7.851

6.  Selective structure-based virtual screening for full and partial agonists of the beta2 adrenergic receptor.

Authors:  Chris de Graaf; Didier Rognan
Journal:  J Med Chem       Date:  2008-08-05       Impact factor: 7.446

7.  Crystal structure of the ligand-free G-protein-coupled receptor opsin.

Authors:  Jung Hee Park; Patrick Scheerer; Klaus Peter Hofmann; Hui-Woog Choe; Oliver Peter Ernst
Journal:  Nature       Date:  2008-06-18       Impact factor: 49.962

8.  Protein-based virtual screening of chemical databases. II. Are homology models of G-Protein Coupled Receptors suitable targets?

Authors:  Caterina Bissantz; Philippe Bernard; Marcel Hibert; Didier Rognan
Journal:  Proteins       Date:  2003-01-01

9.  A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor.

Authors:  Michael A Hanson; Vadim Cherezov; Mark T Griffith; Christopher B Roth; Veli-Pekka Jaakola; Ellen Y T Chien; Jeffrey Velasquez; Peter Kuhn; Raymond C Stevens
Journal:  Structure       Date:  2008-06       Impact factor: 5.006

Review 10.  Virtual ligand screening: strategies, perspectives and limitations.

Authors:  Gerhard Klebe
Journal:  Drug Discov Today       Date:  2006-07       Impact factor: 7.851

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  4 in total

1.  Using ligand-based virtual screening to allosterically stabilize the activated state of a GPCR.

Authors:  Christina M Taylor; Nicole B Rockweiler; Cassie Liu; Loryn Rikimaru; Anna-Karin Tunemalm; Oleg G Kisselev; Garland R Marshall
Journal:  Chem Biol Drug Des       Date:  2010-01-19       Impact factor: 2.817

2.  Monte Carlo loop refinement and virtual screening of the thyroid-stimulating hormone receptor transmembrane domain.

Authors:  M Rejwan Ali; Rauf Latif; Terry F Davies; Mihaly Mezei
Journal:  J Biomol Struct Dyn       Date:  2014-07-11

3.  How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases.

Authors:  D B R K Gupta Udatha; Nobuyoshi Sugaya; Lisbeth Olsson; Gianni Panagiotou
Journal:  Sci Rep       Date:  2012-03-20       Impact factor: 4.379

Review 4.  Recent Advances and Applications of Molecular Docking to G Protein-Coupled Receptors.

Authors:  Damian Bartuzi; Agnieszka A Kaczor; Katarzyna M Targowska-Duda; Dariusz Matosiuk
Journal:  Molecules       Date:  2017-02-22       Impact factor: 4.411

  4 in total

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