Literature DB >> 19287447

Sequencing the species pan-genome.

Stephen Bentley.   

Abstract

Mesh：

Year:  2009        PMID： 19287447     DOI： 10.1038/nrmicro2123

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


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  5 in total

1.  Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome.

Authors:  N Luisa Hiller; Benjamin Janto; Justin S Hogg; Robert Boissy; Susan Yu; Evan Powell; Randy Keefe; Nathan E Ehrlich; Kai Shen; Jay Hayes; Karen Barbadora; William Klimke; Dmitry Dernovoy; Tatiana Tatusova; Julian Parkhill; Stephen D Bentley; J Christopher Post; Garth D Ehrlich; Fen Z Hu
Journal:  J Bacteriol       Date:  2007-08-03       Impact factor: 3.490

2.  Estimating the size of the bacterial pan-genome.

Authors:  Pascal Lapierre; J Peter Gogarten
Journal:  Trends Genet       Date:  2009-01-23       Impact factor: 11.639

3.  Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".

Authors:  Hervé Tettelin; Vega Masignani; Michael J Cieslewicz; Claudio Donati; Duccio Medini; Naomi L Ward; Samuel V Angiuoli; Jonathan Crabtree; Amanda L Jones; A Scott Durkin; Robert T Deboy; Tanja M Davidsen; Marirosa Mora; Maria Scarselli; Immaculada Margarit y Ros; Jeremy D Peterson; Christopher R Hauser; Jaideep P Sundaram; William C Nelson; Ramana Madupu; Lauren M Brinkac; Robert J Dodson; Mary J Rosovitz; Steven A Sullivan; Sean C Daugherty; Daniel H Haft; Jeremy Selengut; Michelle L Gwinn; Liwei Zhou; Nikhat Zafar; Hoda Khouri; Diana Radune; George Dimitrov; Kisha Watkins; Kevin J B O'Connor; Shannon Smith; Teresa R Utterback; Owen White; Craig E Rubens; Guido Grandi; Lawrence C Madoff; Dennis L Kasper; John L Telford; Michael R Wessels; Rino Rappuoli; Claire M Fraser
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

4.  Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes.

Authors:  Stephen D Bentley; David M Aanensen; Angeliki Mavroidi; David Saunders; Ester Rabbinowitsch; Matthew Collins; Kathy Donohoe; David Harris; Lee Murphy; Michael A Quail; Gabby Samuel; Ian C Skovsted; Margit Staum Kaltoft; Bart Barrell; Peter R Reeves; Julian Parkhill; Brian G Spratt
Journal:  PLoS Genet       Date:  2006-03-10       Impact factor: 5.917

5.  Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition.

Authors:  Tristan Lefébure; Michael J Stanhope
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
  5 in total
  25 in total

1.  Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study.

Authors:  Sabina Zoledowska; Agata Motyka-Pomagruk; Agnieszka Misztak; Ewa Lojkowska
Journal:  Methods Mol Biol       Date:  2021

2.  A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal.

Authors:  Rikke Kristiansen; Hien Thi Thu Nguyen; Aaron Marc Saunders; Jeppe Lund Nielsen; Reinhard Wimmer; Vang Quy Le; Simon Jon McIlroy; Steve Petrovski; Robert J Seviour; Alexandra Calteau; Kåre Lehmann Nielsen; Per Halkjær Nielsen
Journal:  ISME J       Date:  2012-11-22       Impact factor: 10.302

3.  Pan-PCR, a computational method for designing bacterium-typing assays based on whole-genome sequence data.

Authors:  Joy Y Yang; Shelise Brooks; Jennifer A Meyer; Robert R Blakesley; Adrian M Zelazny; Julia A Segre; Evan S Snitkin
Journal:  J Clin Microbiol       Date:  2012-12-19       Impact factor: 5.948

4.  Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution.

Authors:  Jingqiu Liao; Xiaodong Guo; Daniel L Weller; Shaul Pollak; Daniel H Buckley; Martin Wiedmann; Otto X Cordero
Journal:  Nat Microbiol       Date:  2021-07-15       Impact factor: 17.745

5.  Structure, function, and evolution of the Thiomonas spp. genome.

Authors:  Florence Arsène-Ploetze; Sandrine Koechler; Marie Marchal; Jean-Yves Coppée; Michael Chandler; Violaine Bonnefoy; Céline Brochier-Armanet; Mohamed Barakat; Valérie Barbe; Fabienne Battaglia-Brunet; Odile Bruneel; Christopher G Bryan; Jessica Cleiss-Arnold; Stéphane Cruveiller; Mathieu Erhardt; Audrey Heinrich-Salmeron; Florence Hommais; Catherine Joulian; Evelyne Krin; Aurélie Lieutaud; Didier Lièvremont; Caroline Michel; Daniel Muller; Philippe Ortet; Caroline Proux; Patricia Siguier; David Roche; Zoé Rouy; Grégory Salvignol; Djamila Slyemi; Emmanuel Talla; Stéphanie Weiss; Jean Weissenbach; Claudine Médigue; Philippe N Bertin
Journal:  PLoS Genet       Date:  2010-02-26       Impact factor: 5.917

6.  Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification.

Authors:  Xiangyu Deng; Adam M Phillippy; Zengxin Li; Steven L Salzberg; Wei Zhang
Journal:  BMC Genomics       Date:  2010-09-16       Impact factor: 3.969

7.  Analysis of ultra low genome conservation in Clostridium difficile.

Authors:  Joy Scaria; Lalit Ponnala; Tavan Janvilisri; Weiwei Yan; Lukas A Mueller; Yung-Fu Chang
Journal:  PLoS One       Date:  2010-12-08       Impact factor: 3.240

8.  Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates.

Authors:  Sean Conlan; Lilia A Mijares; Jesse Becker; Robert W Blakesley; Gerard G Bouffard; Shelise Brooks; Holly Coleman; Jyoti Gupta; Natalie Gurson; Morgan Park; Brian Schmidt; Pamela J Thomas; Michael Otto; Heidi H Kong; Patrick R Murray; Julia A Segre
Journal:  Genome Biol       Date:  2012-07-25       Impact factor: 13.583

9.  Conserved symbiotic plasmid DNA sequences in the multireplicon pangenomic structure of Rhizobium etli.

Authors:  Víctor González; José L Acosta; Rosa I Santamaría; Patricia Bustos; José L Fernández; Ismael L Hernández González; Rafael Díaz; Margarita Flores; Rafael Palacios; Jaime Mora; Guillermo Dávila
Journal:  Appl Environ Microbiol       Date:  2010-01-04       Impact factor: 4.792

10.  Bacillus pumilus Group Comparative Genomics: Toward Pangenome Features, Diversity, and Marine Environmental Adaptation.

Authors:  Xiaoteng Fu; Linfeng Gong; Yang Liu; Qiliang Lai; Guangyu Li; Zongze Shao
Journal:  Front Microbiol       Date:  2021-05-07       Impact factor: 5.640
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