Literature DB >> 19279071

Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometry.

Anastasia K Yocum1, Arul M Chinnaiyan.   

Abstract

Quantitative targeted proteomics has recently taken front stage in the proteomics community. Centered on multiple reaction monitoring-mass spectrometry (MRM-MS) methodologies, quantitative targeted proteomics is being used in the verification of global proteomics data, the discovery of lower abundance proteins, protein post-translational modifications, discrimination of select highly homologous protein isoforms and as the final step in biomarker discovery. An older methodology utilized with small molecule analysis, the proteomics community is making great technological strides to develop MRM-MS as the next method to address previously challenging issues in global proteomics experimentation, namely dynamic range, identification of post-translational modifications, sensitivity and selectivity of measurement which will undoubtedly further biomedical knowledge. This brief review will provide a general introduction of MRM-MS and highlight its novel application for targeted quantitative proteomic experimentations.

Mesh:

Substances:

Year:  2009        PMID: 19279071      PMCID: PMC2722263          DOI: 10.1093/bfgp/eln056

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  56 in total

1.  Polymorphisms in the vitamin D receptor and their associations with risk of schizophrenia and selected anthropometric measures.

Authors:  H Y Handoko; D J Nancarrow; B J Mowry; J J McGrath
Journal:  Am J Hum Biol       Date:  2006 May-Jun       Impact factor: 1.937

2.  Analysis of phosphorylation sites on focal adhesion kinase using nanospray liquid chromatography/multiple reaction monitoring mass spectrometry.

Authors:  Eugene Ciccimaro; John Hevko; Ian A Blair
Journal:  Rapid Commun Mass Spectrom       Date:  2006       Impact factor: 2.419

3.  A quantitative results-driven approach to analyzing multisite protein phosphorylation: the phosphate-dependent phosphorylation profile of the transcription factor Pho4.

Authors:  Francesca Zappacosta; Therese S Collingwood; Michael J Huddleston; Roland S Annan
Journal:  Mol Cell Proteomics       Date:  2006-07-06       Impact factor: 5.911

4.  Deviation from the mobile proton model in amino-modified peptides: implications for multiple reaction monitoring analysis of peptides.

Authors:  Steven J Locke; Andrew D Leslie; Jeremy E Melanson; Devanand M Pinto
Journal:  Rapid Commun Mass Spectrom       Date:  2006       Impact factor: 2.419

5.  A computational approach toward label-free protein quantification using predicted peptide detectability.

Authors:  Haixu Tang; Randy J Arnold; Pedro Alves; Zhiyin Xun; David E Clemmer; Milos V Novotny; James P Reilly; Predrag Radivojac
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

6.  Absolute quantification of multisite phosphorylation by selective reaction monitoring mass spectrometry: determination of inhibitory phosphorylation status of cyclin-dependent kinases.

Authors:  Viveka Mayya; Karim Rezual; Linfeng Wu; Michael B Fong; David K Han
Journal:  Mol Cell Proteomics       Date:  2006-03-16       Impact factor: 5.911

7.  Relative and absolute quantitative expression profiling of cytochromes P450 using isotope-coded affinity tags.

Authors:  Rosalind E Jenkins; Neil R Kitteringham; Christie L Hunter; Sally Webb; Tony J Hunt; Robert Elsby; Rod B Watson; Dominic Williams; Stephen R Pennington; B Kevin Park
Journal:  Proteomics       Date:  2006-03       Impact factor: 3.984

8.  Relative and absolute quantitative shotgun proteomics: targeting low-abundance proteins in Arabidopsis thaliana.

Authors:  Stefanie Wienkoop; Wolfram Weckwerth
Journal:  J Exp Bot       Date:  2006-03-30       Impact factor: 6.992

9.  Quantification of intermediate-abundance proteins in serum by multiple reaction monitoring mass spectrometry in a single-quadrupole ion trap.

Authors:  Shanhua Lin; Thomas A Shaler; Christopher H Becker
Journal:  Anal Chem       Date:  2006-08-15       Impact factor: 6.986

10.  The PeptideAtlas project.

Authors:  Frank Desiere; Eric W Deutsch; Nichole L King; Alexey I Nesvizhskii; Parag Mallick; Jimmy Eng; Sharon Chen; James Eddes; Sandra N Loevenich; Ruedi Aebersold
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

View more
  31 in total

1.  Identification of CSPα clients reveals a role in dynamin 1 regulation.

Authors:  Yong-Quan Zhang; Michael X Henderson; Christopher M Colangelo; Stephen D Ginsberg; Can Bruce; Terence Wu; Sreeganga S Chandra
Journal:  Neuron       Date:  2012-04-12       Impact factor: 17.173

2.  A modified "cross-talk" between histone H2B Lys-120 ubiquitination and H3 Lys-79 methylation.

Authors:  Agus Darwanto; Matthew P Curtis; Matthew Schrag; Wolff Kirsch; Peng Liu; Guoliang Xu; Jonathan W Neidigh; Kangling Zhang
Journal:  J Biol Chem       Date:  2010-05-03       Impact factor: 5.157

3.  Inflammatory stimuli regulate caspase substrate profiles.

Authors:  Nicholas J Agard; David Maltby; James A Wells
Journal:  Mol Cell Proteomics       Date:  2010-02-20       Impact factor: 5.911

Review 4.  Reverse phase protein microarrays advance to use in clinical trials.

Authors:  Claudius Mueller; Lance A Liotta; Virginia Espina
Journal:  Mol Oncol       Date:  2010-10-16       Impact factor: 6.603

Review 5.  Stable isotope dilution mass spectrometry for membrane transporter quantitation.

Authors:  Vahid Farrokhi; Adam J McShane; Reza Nemati; Xudong Yao
Journal:  AAPS J       Date:  2013-10       Impact factor: 4.009

6.  Characterization of Wax Esters by Electrospray Ionization Tandem Mass Spectrometry: Double Bond Effect and Unusual Product Ions.

Authors:  Jianzhong Chen; Kari B Green; Kelly K Nichols
Journal:  Lipids       Date:  2015-07-16       Impact factor: 1.880

7.  Multiple Reaction Monitoring for Direct Quantitation of Intact Proteins Using a Triple Quadrupole Mass Spectrometer.

Authors:  Evelyn H Wang; Peter C Combe; Kevin A Schug
Journal:  J Am Soc Mass Spectrom       Date:  2016-03-08       Impact factor: 3.109

8.  Quantification of glycopeptides by multiple reaction monitoring liquid chromatography/tandem mass spectrometry.

Authors:  Ehwang Song; Swetha Pyreddy; Yehia Mechref
Journal:  Rapid Commun Mass Spectrom       Date:  2012-09-15       Impact factor: 2.419

9.  Proteomics: challenges, techniques and possibilities to overcome biological sample complexity.

Authors:  Kondethimmanahalli Chandramouli; Pei-Yuan Qian
Journal:  Hum Genomics Proteomics       Date:  2009-12-08

10.  Development of reverse phase protein microarrays for the validation of clusterin, a mid-abundant blood biomarker.

Authors:  Adriana Aguilar-Mahecha; Christiane Cantin; Maureen O'Connor-McCourt; Andre Nantel; Mark Basik
Journal:  Proteome Sci       Date:  2009-04-06       Impact factor: 2.480

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.