Literature DB >> 19277739

Prolyl-4-hydroxylase (AtP4H1) mediates and mimics low oxygen response in Arabidopsis thaliana.

Mehar Hasan Asif1, Prabodh Kumar Trivedi, Prashant Misra, Pravendra Nath.   

Abstract

Proline hydroxylation is an important phenomenon of a living cell. Prolyl-4-hydroxylases (P4H) responsible for this process have been characterized from animals, and one of its forms, HIF-P4H, is regarded as an oxygen sensor. In plants, P4H has been partially characterized from few species, and one of the Arabidopsis P4H (AtP4H1) has been shown to hydroxylate proline-rich peptides in vitro. In order to study its function in planta, we have overexpressed AtP4H1 in Arabidopsis. The AtP4H1oexp plants showed hypoxia-in-normoxia phenotype with strict requirement for carbon source for its growth, increased root hair, absence of trichome, and reduction in seed size. Genome-wide expression analyses suggest that expression of several genes related to hypoxia as well as plant growth and development are upregulated in AtP4H1oexp lines. Based on our studies on AtP4H1oexp lines, we speculate a direct role of AtP4H1 in hypoxia stress and in different stages of plant growth and development.

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Year:  2009        PMID: 19277739     DOI: 10.1007/s10142-009-0118-y

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  31 in total

1.  A conserved family of prolyl-4-hydroxylases that modify HIF.

Authors:  R K Bruick; S L McKnight
Journal:  Science       Date:  2001-10-11       Impact factor: 47.728

2.  C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation.

Authors:  A C Epstein; J M Gleadle; L A McNeill; K S Hewitson; J O'Rourke; D R Mole; M Mukherji; E Metzen; M I Wilson; A Dhanda; Y M Tian; N Masson; D L Hamilton; P Jaakkola; R Barstead; J Hodgkin; P H Maxwell; C W Pugh; C J Schofield; P J Ratcliffe
Journal:  Cell       Date:  2001-10-05       Impact factor: 41.582

3.  Evidence for 4-hydroxyproline in viral proteins. Characterization of a viral prolyl 4-hydroxylase and its peptide substrates.

Authors:  M Eriksson; J Myllyharju; H Tu; M Hellman; K I Kivirikko
Journal:  J Biol Chem       Date:  1999-08-06       Impact factor: 5.157

4.  A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia.

Authors:  Elena Loreti; Alessandra Poggi; Giacomo Novi; Amedeo Alpi; Pierdomenico Perata
Journal:  Plant Physiol       Date:  2005-02-25       Impact factor: 8.340

5.  Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis.

Authors:  Fenglong Liu; Tara Vantoai; Linda P Moy; Geoffrey Bock; Lara D Linford; John Quackenbush
Journal:  Plant Physiol       Date:  2005-02-25       Impact factor: 8.340

6.  The classical arabinogalactan protein gene family of arabidopsis.

Authors:  C J Schultz; K L Johnson; G Currie; A Bacic
Journal:  Plant Cell       Date:  2000-09       Impact factor: 11.277

7.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

8.  Prolyl 4-hydroxylation regulates Argonaute 2 stability.

Authors:  Hank H Qi; Pat P Ongusaha; Johanna Myllyharju; Dongmei Cheng; Outi Pakkanen; Yujiang Shi; Sam W Lee; Junmin Peng; Yang Shi
Journal:  Nature       Date:  2008-08-06       Impact factor: 49.962

9.  MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

Authors:  Oliver Thimm; Oliver Bläsing; Yves Gibon; Axel Nagel; Svenja Meyer; Peter Krüger; Joachim Selbig; Lukas A Müller; Seung Y Rhee; Mark Stitt
Journal:  Plant J       Date:  2004-03       Impact factor: 6.417

10.  Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis.

Authors:  Airica Baxter-Burrell; Ruth Chang; Patricia Springer; Julia Bailey-Serres
Journal:  Ann Bot       Date:  2003-01       Impact factor: 4.357

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  22 in total

1.  Prolyl 4-hydroxylase genes are subjected to alternative splicing in roots of maize seedlings under waterlogging.

Authors:  Xiling Zou; Yuanyuan Jiang; Yonglian Zheng; Meidong Zhang; Zuxin Zhang
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2.  The Skp1 protein from Toxoplasma is modified by a cytoplasmic prolyl 4-hydroxylase associated with oxygen sensing in the social amoeba Dictyostelium.

Authors:  Yuechi Xu; Kevin M Brown; Zhuo A Wang; Hanke van der Wel; Crystal Teygong; Dongmei Zhang; Ira J Blader; Christopher M West
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

3.  Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening.

Authors:  Mehar Hasan Asif; Deepika Lakhwani; Sumya Pathak; Sweta Bhambhani; Sumit K Bag; Prabodh Kumar Trivedi
Journal:  Funct Integr Genomics       Date:  2013-11-26       Impact factor: 3.410

4.  Polymorphisms in the AOX2 gene are associated with the rooting ability of olive cuttings.

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Journal:  Plant Cell Rep       Date:  2015-03-07       Impact factor: 4.570

5.  Plant oxygen sensing is mediated by the N-end rule pathway: a milestone in plant anaerobiosis.

Authors:  Rashmi Sasidharan; Angelika Mustroph
Journal:  Plant Cell       Date:  2011-12-29       Impact factor: 11.277

6.  Comparative analysis of transcription factor gene families from Papaver somniferum: identification of regulatory factors involved in benzylisoquinoline alkaloid biosynthesis.

Authors:  Parul Agarwal; Sumya Pathak; Deepika Lakhwani; Parul Gupta; Mehar Hasan Asif; Prabodh Kumar Trivedi
Journal:  Protoplasma       Date:  2015-06-25       Impact factor: 3.356

7.  Unraveling new genes associated with seed development and metabolism in Bixa orellana L. by expressed sequence tag (EST) analysis.

Authors:  Virgínia L F Soares; Simone M Rodrigues; Tahise M de Oliveira; Talisson O de Queiroz; Lívia S Lima; Braz T Hora-Júnior; Karina P Gramacho; Fabienne Micheli; Júlio C M Cascardo; Wagner C Otoni; Abelmon S Gesteira; Marcio G C Costa
Journal:  Mol Biol Rep       Date:  2010-06-19       Impact factor: 2.316

8.  Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.

Authors:  Sonali Dubey; Manju Shri; Prashant Misra; Deepika Lakhwani; Sumit Kumar Bag; Mehar H Asif; Prabodh Kumar Trivedi; Rudro Deo Tripathi; Debasis Chakrabarty
Journal:  Funct Integr Genomics       Date:  2014-02-20       Impact factor: 3.410

9.  Identification of transcriptome induced in roots of maize seedlings at the late stage of waterlogging.

Authors:  Xiling Zou; Yuanyuan Jiang; Lei Liu; Zuxin Zhang; Yonglian Zheng
Journal:  BMC Plant Biol       Date:  2010-08-25       Impact factor: 4.215

Review 10.  Sweet Modifications Modulate Plant Development.

Authors:  Tibo De Coninck; Koen Gistelinck; Henry C Janse van Rensburg; Wim Van den Ende; Els J M Van Damme
Journal:  Biomolecules       Date:  2021-05-18
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