Literature DB >> 19275409

Diffusion-influenced reactions involving a reactant with two active sites.

Aeri Kang1, Ji-Hyun Kim, Sangyoub Lee, Hwangseo Park.   

Abstract

We consider the kinetics of diffusion-influenced reactions which involve a reactant species that can be modeled as a sphere with two reactive patches located on its surface at an arbitrary angular distance. An approximate analytic expression for the rate coefficient is derived based on the Wilemski-Fixman-Weiss decoupling approximation and a multivariable Padé approximation. The accuracy of the rate expression is evaluated against computer simulations as well as an exact analytic expression available for a special case. The present theory provides accurate estimates for the magnitude of diffusive interference effects between the two reactive patches. We also present an efficient Brownian dynamics method for calculating the time-dependent rate coefficient, which is applicable when the reactants involve multiple active sites.

Mesh:

Year:  2009        PMID: 19275409     DOI: 10.1063/1.3082010

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Influence of neighboring reactive particles on diffusion-limited reactions.

Authors:  Changsun Eun; Peter M Kekenes-Huskey; J Andrew McCammon
Journal:  J Chem Phys       Date:  2013-07-28       Impact factor: 3.488

2.  Theory of Diffusion-Influenced Reaction Networks.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Phys Chem B       Date:  2018-10-04       Impact factor: 2.991

3.  Influence of diffusion on the kinetics of multisite phosphorylation.

Authors:  Irina V Gopich; Attila Szabo
Journal:  Protein Sci       Date:  2015-07-07       Impact factor: 6.725

4.  Diffusion-induced competitive two-site binding.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Chem Phys       Date:  2019-03-07       Impact factor: 3.488

5.  Effects of the Size, the Number, and the Spatial Arrangement of Reactive Patches on a Sphere on Diffusion-limited Reaction Kinetics: A Comprehensive Study.

Authors:  Changsun Eun
Journal:  Int J Mol Sci       Date:  2020-02-03       Impact factor: 5.923

Review 6.  Spatial simulations in systems biology: from molecules to cells.

Authors:  Michael Klann; Heinz Koeppl
Journal:  Int J Mol Sci       Date:  2012-06-21       Impact factor: 6.208

  6 in total

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